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Load Software with Modules

To facilitate the diverse work that happens on the YCRC clusters we compile, install, and manage software packages separately from those installed in standard system directories. We use EasyBuild to build, install, and manage packages. You can access these packages as Lmod modules. The modules involving compiled software are arranged into hierarchical toolchains that make dependencies more consistent when you load multiple modules.

Warning

Avoid loading Python or R modules simultaneously with conda environments. This will almost always break something.

Installed Software Modules

Available Software Modules (click to expand)
Package Versions
APR 1.7.5
APR-util 1.6.3
ATK 2.38.0
Armadillo 11.4.3
Autoconf 2.71,2.72
Automake 1.16.5,1.16.5
Autotools 20220317,20231222
AxiSEM3D 2024Oct16
BLIS 0.9.0
BeautifulSoup 4.11.1
Bison 3.8.2,3.8.2,3.8.2
Boost 1.81.0,1.81.0
Brotli 1.0.9
Brunsli 0.1
CESM 2.1.3,2.1.3
CESM-deps 2,2
CFITSIO 4.2.0
CMake 3.24.3
CP2K 2023.1
CUDA 12.1.1
Check 0.15.2
DB 18.1.40
DBus 1.15.2
Doxygen 1.9.5
ELPA 2022.05.001
ESMF 8.3.0,8.3.0
EasyBuild 4.9.3,4.9.4
Eigen 3.4.0
FFTW 2.1.5,2.1.5,3.3.10,3.3.10
FFTW.MPI 3.3.10
FFmpeg 5.1.2
FHI-aims 231212_1
FLAC 1.4.2
FlexiBLAS 3.2.1
FriBidi 1.0.12
GCC 12.2.0
GCCcore 12.2.0,13.3.0
GDAL 3.6.2
GDRCopy 2.3.1
GEOS 3.11.1
GLPK 5.0
GLib 2.75.0
GMP 6.2.1
GObject-Introspection 1.74.0
GROMACS 2023.3
GSL 2.7
GTK3 3.24.35
Gdk-Pixbuf 2.42.10
Ghostscript 10.0.0
HDF 4.2.15
HDF5 1.14.0,1.14.0,1.14.0
HPCG 3.1
HPL 2.3
HarfBuzz 5.3.1
Highway 1.0.3
ICU 72.1
IOR 4.0.0,4.0.0
IPython 8.14.0
ImageMagick 7.1.0
Imath 3.1.6
JasPer 4.0.0
Java 11.0.16
Julia 1.10.4
JupyterLab 4.0.3
JupyterNotebook 7.0.3
LAME 3.100
LAMMPS 2Aug2023
LERC 4.0.0
LLVM 15.0.5
LibTIFF 4.4.0
Libint 2.7.2
LittleCMS 2.14
M4 1.4.19,1.4.19,1.4.19
MATLAB 2023b
MDI 1.4.16
METIS 5.1.0
MPFR 4.2.0
Mako 1.2.4
Mesa 22.2.4
Meson 0.64.0
NASM 2.15.05
NLopt 2.7.1
Ninja 1.11.1
OSU-Micro-Benchmarks 6.2
OpenBLAS 0.3.21
OpenEXR 3.1.5
OpenJPEG 2.5.0
OpenMPI 4.1.4,4.1.4
OpenPGM 5.2.122
OpenSSL 1.1
PBZIP2 1.1.13
PCRE 8.45
PCRE2 10.40
PLUMED 2.9.2
PROJ 9.1.1
Pango 1.50.12
Perl 5.36.0,5.38.2
PnetCDF 1.13.0,1.13.0
PostgreSQL 15.2
PyYAML 6.0
Python 3.10.8,3.10.8
Qhull 2020.2
QuantumESPRESSO 7.2
R 4.4.1
R-bundle-CRAN 2024.06
Rust 1.65.0
SCons 4.5.2
SDL2 2.26.3
SQLite 3.39.4
SWIG 4.1.1
ScaFaCoS 1.0.4
ScaLAPACK 2.2.0
SciPy-bundle 2023.02
Serf 1.3.9
Subversion 1.14.3
Szip 2.1.1
Tcl 8.6.12
Tk 8.6.12
TotalView 2023.3.10
UCC 1.1.0
UCX 1.13.1,1.16.0
UCX-CUDA 1.13.1
UDUNITS 2.2.28
UnZip 6.0
VASP 6.4.2
VTK 9.2.6
Voro++ 0.4.6
Wannier90 3.1.0
X11 20221110
XML-LibXML 2.0208
XZ 5.2.7
Xerces-C++ 3.2.4
Xvfb 21.1.6
Yasm 1.3.0
ZeroMQ 4.3.4
archspec 0.2.0
arpack-ng 3.8.0
at-spi2-atk 2.38.0
at-spi2-core 2.46.0
awscli 2.17.51
binutils 2.39,2.39,2.42,2.42
bzip2 1.0.8
cURL 7.86.0
cairo 1.17.4
elbencho 2.0,3.0
expat 2.4.9
ffnvcodec 11.1.5.2
fio 3.34
flex 2.6.4,2.6.4,2.6.4
fontconfig 2.14.1
foss 2022b
freetype 2.12.1
gettext 0.21.1,0.21.1
gfbf 2022b
giflib 5.2.1
git 2.38.1
gompi 2022b
googletest 1.12.1
gperf 3.1
groff 1.22.4
gzip 1.12
h5py 3.8.0
help2man 1.49.2,1.49.3
hwloc 2.8.0
hypothesis 6.68.2
iimpi 2022b,2024a
imkl 2022.2.1,2024.2.0
imkl-FFTW 2022.2.1,2024.2.0
impi 2021.7.1,2021.13.0
intel 2022b,2024a
intel-compilers 2022.2.1,2024.2.0
intltool 0.51.0
iomkl 2022b
iompi 2022b
jbigkit 2.1
json-c 0.16
jupyter-server 2.7.0
kim-api 2.3.0
lftp 4.9.2
libGLU
libaio
libarchive
libdeflate
libdrm
libepoxy
libfabric
libffi
libgeotiff
libgit2
libglvnd
libiconv
libjpeg-turbo
libogg
libopus
libpciaccess
libpng
libreadline
libsndfile
libsodium
libtirpc
libtool
libunwind
libvorbis
libvori
libxc
libxml2
libxslt
libxsmm
libyaml
lxml 4.9.2
lz4 1.9.4
make 4.3
maturin 1.1.0
miniconda 24.7.1
mpi4py 3.1.4
ncurses 6.3,6.3
netCDF 4.9.0,4.9.0,4.9.0
netCDF-C++4 4.3.1,4.3.1
netCDF-Fortran 4.6.0,4.6.0
nettle 3.8.1
networkx 3.0
nlohmann_json 3.11.2
nodejs 18.12.1,20.11.1
numactl 2.0.16,2.0.18
patchelf 0.17.2
pigz 2.7
pixman 0.42.2
pkg-config 0.29.2
pkgconf 1.8.0,1.9.3,2.2.0
pkgconfig 1.5.5
pybind11 2.10.3
ruamel.yaml 0.17.21
scikit-build 0.17.2
tbb 2021.10.0
utf8proc 2.8.0
util-linux 2.38.1
x264 20230226
x265 3.5
xorg-macros 1.19.3
xxd 9.0.1696
zlib 1.2.12,1.2.12,1.3.1,1.3.1
zstd 1.5.2
Package Versions
ACTC 1.1,1.1
ADMIXTURE 1.3.0
AFNI 23.2.08,2022.1.14,2023.1.01,2023.1.07,24.1.22
ANTLR 2.7.7
ANTs 2.3.5
APBS 1.4.2.1,3.4.1.Linux
APR 1.7.0,1.7.5
APR-util 1.6.1,1.6.3
ASE 3.22.1
ATK 2.36.0,2.38.0
AUGUSTUS 3.4.0
Abseil 20230125.2
AdapterRemoval 2.3.2
AlphaFold 2.2.3,2.2.3,2.2.4,2.2.4,2.3.2,2.3.2,3.0.0
AmberTools 23.6
Archive-Zip 1.68,1.68
AreTomo 1.3.4
AreTomo2 1.0.0
AreTomo3 2.0.6beta
Armadillo 10.2.1,11.4.3,11.4.3
Arrow 0.17.1,0.17.1,6.0.0,11.0.0,14.0.1,16.1.0
Aspera-CLI 3.9.6.1467.159c5b1
Aspera-Connect 4.2.4.265
AuthentiCT 1.0.1
Autoconf 2.69,2.71,2.72
Automake 1.16.2,1.16.5,1.16.5
Autotools 20200321,20220317,20231222
BBMap 38.90
BCFtools 1.11,1.16,1.21
BEDOPS 2.4.41
BEDTools 2.30.0
BGEN-enkre 1.1.7
BLAST 2.2.26
BLAST+ 2.13.0,2.14.1,2.15.0
BLAT 3.5,3.5
BLIS 0.9.0,1.0
BLT 20220626
BWA 0.7.17,0.7.17,0.7.17
BamTools 2.5.1,2.5.1,2.5.2
BaseSpaceCLI 1.5.3
Bazel 3.7.2,5.4.1,6.1.0,6.3.1
Beast 2.6.3,2.6.3,2.6.7,2.7.4,2.7.6
BeautifulSoup 4.11.1
Bio-DB-BigFile 1.07,1.07
Bio-DB-HTS 3.01,3.01
BioPP 2.4.1
BioPerl 1.7.8,1.7.8
Biopython 1.78,1.79,1.81,1.83
Bismark 0.24.0
Bison 3.0.4,3.0.4,3.0.5,3.7.1,3.7.1,3.8.2,3.8.2,3.8.2
Blender 4.0.1,4.2.1
Block 1.5.3
Blosc 1.21.0,1.21.3
Blosc2 2.8.0
Boost 1.74.0,1.74.0,1.74.0,1.74.0,1.74.0,1.81.0,1.81.0,1.81.0,1.83.0,1.85.0,1.86.0
Boost.MPI 1.81.0,1.81.0
Boost.Python 1.74.0,1.81.0
Boost.Python-NumPy 1.74.0,1.81.0
Bowtie 1.3.0,1.3.0,1.3.1
Bowtie2 2.3.4.3,2.4.2,2.4.2,2.5.1
Brotli 1.0.9,1.0.9
Brunsli 0.1
Bsoft 2.1.4
CAMPARI 4.0
CCP4 8.0.011,8.0.015
CD-HIT 4.8.1
CDO 2.2.2
CESM 2.1.3,2.1.3
CESM-deps 2,2
CFITSIO 3.48,4.2.0
CGAL 4.14.3,4.14.3,5.2,5.2.4,5.5.2
CLHEP 2.4.4.0,2.4.6.4
CMake 3.18.4,3.18.4,3.20.1,3.24.3,3.29.3
COMSOL 5.2a,5.2a
CONN 22a
CP2K 8.1
CPPE 0.3.1
CREST 3.0.1,3.0.2
CTFFIND 4.1.14,4.1.14,4.1.14,4.1.14,4.1.14
CUDA 10.1.243,11.1.1,11.3.1,11.8.0,12.0.0,12.1.1,12.6.0
CUDAcore 11.1.1,11.3.1
CUnit 2.1
Cartopy 0.20.3,0.22.0
Catch2 2.13.10
Cbc 2.10.5
CellRanger 3.0.2,6.1.2,7.0.0,7.0.1,7.1.0,7.2.0,8.0.1
CellRanger-ARC 2.0.2
Cereal 1.3.2,1.3.2
Cgl 0.60.7
CharLS 2.2.0,2.4.2
CheMPS2 1.8.12
Check 0.15.2,0.15.2
Chimera 1.16
ChimeraX 1.6.1,1.7,1.8
Clang 11.0.1,13.0.1,15.0.5,16.0.4,16.0.4
Clp 1.17.8
Code-Server 4.7.0,4.7.0,4.16.1,4.17.0
CoinUtils 2.11.9
Compress-Raw-Zlib 2.202,2.202
CoordgenLibs 3.0.2
Coot 0.9.7,0.9.8.6
CppUnit 1.15.1
Cufflinks 20190706
Cython 0.29.22,3.0.8,3.0.10
Cytoscape 3.9.1
DB 18.1.40,18.1.40
DBD-mysql 4.050,4.050
DB_File 1.855
DBus 1.13.18,1.15.2
DIAMOND 2.0.15,2.1.7
DMTCP 3.0.0,3.0.0
DSSP 4.2.1,4.4.7
Dice 20240101
Doxygen 1.8.20,1.9.5
EDirect 20.4.20230912,20.5.20231006,22.8.20241011
EIGENSOFT 7.2.1
ELPA 2020.11.001,2020.11.001,2021.11.001,2022.05.001
EMAN 1.9
EMAN2 2.91,2.99.47
EMBOSS 6.6.0
ESM-2 2.0.0
ESMF 8.3.0,8.3.0
EasyBuild 4.6.2,4.7.0,4.7.1,4.7.2,4.8.0,4.8.1,4.8.2,4.9.0,4.9.1,4.9.2,4.9.3
Eigen 3.3.8,3.3.9,3.4.0,3.4.0,3.4.0
El-MAVEN 0.12.1beta
Emacs 28.1,28.2
ExifTool 12.58,12.70
Exodus 20240403,20240403
FASTX-Toolkit 0.0.14
FFTW 2.1.5,2.1.5,2.1.5,2.1.5,3.3.8,3.3.8,3.3.8,3.3.8,3.3.8,3.3.10,3.3.10,3.3.10,3.3.10,3.3.10
FFTW.MPI 3.3.10,3.3.10,3.3.10
FFmpeg 4.3.1,5.1.2
FHI-aims 231212_1
FLAC 1.3.3,1.4.2
FLASH 2.2.00
FLTK 1.3.5,1.3.8
FRE-NCtools 2024.05
FSL 6.0.5.2,6.0.5.2,6.0.7.9
FTGL 2.3,2.4.0
Faiss 1.7.4
FastME 2.1.6.3
FastQC 0.11.9,0.12.1
FastUniq 1.1
Fiji 2.14.0,20221201,20230801
Fiona 1.9.2
Flask 2.2.3
FlexiBLAS 3.2.1,3.2.1,3.4.4
FragGeneScan 1.31
FreeImage 3.18.0,3.18.0
FreeSurfer dev,dev,7.3.2,7.4.1
FreeXL 2.0.0
FriBidi 1.0.10,1.0.12
GATK 3.8,4.2.0.0,4.2.6.1,4.4.0.0,4.5.0.0,4.6.0.0
GCC 10.2.0,12.2.0,13.3.0
GCCcore 7.3.0,10.2.0,12.2.0,13.3.0
GCTA 1.94.1
GConf 3.2.6
GDAL 3.2.1,3.6.2
GDB 10.1,13.2
GDCM 3.0.21
GDRCopy 2.1,2.3,2.3.1,2.4.1
GEOS 3.9.1,3.11.1
GL2PS 1.4.2,1.4.2
GLM 0.9.9.8
GLPK 4.65,5.0
GLib 2.66.1,2.75.0
GLibmm 2.49.7
GMP 6.2.0,6.2.1
GObject-Introspection 1.66.1,1.66.1,1.74.0
GRASS 8.2.0
GROMACS 2021.5,2023.3
GSEA 4.3.2
GSL 2.5,2.6,2.6,2.6,2.7,2.7,2.7
GST-libav 1.18.4,1.22.1
GST-plugins-bad 1.22.5
GST-plugins-base 1.18.4,1.18.4,1.22.1,1.22.1
GST-plugins-good 1.18.4,1.22.1
GStreamer 1.18.4,1.18.4,1.22.1,1.22.1
GTK+ 3.24.23
GTK2 2.24.33
GTK3 3.24.35
GTK4 4.11.3
GTS 0.7.6
Garfield++ 5.0
Gaussian 16,16
Gctf 1.18,1.18
Gdk-Pixbuf 2.40.0,2.40.0,2.42.10
Geant4 10.7.1
Geant4-data 11.3
GenomeTools 1.6.1
Ghostscript 9.53.3,10.0.0
GitPython 3.1.31
Globus-CLI 3.18.0,3.30.1
GnuTLS 3.7.8
Go 1.17.6,1.21.1,1.21.4,1.22.1
Grace 5.1.25
Gradle 8.6
Graphene 1.10.8
GraphicsMagick 1.3.36
Graphviz 2.47.0
Guile 2.2.7,3.0.9,3.0.9
Gurobi 9.1.2,10.0.3
HDF 4.2.15,4.2.15
HDF5 1.10.7,1.10.7,1.10.7,1.10.7,1.14.0,1.14.0,1.14.0,1.14.0
HDFView 3.3.1
HH-suite 3.3.0,3.3.0,3.3.0
HISAT-3N 20221013
HISAT2 2.2.1
HMMER 3.3.2,3.3.2,3.4
HOOMD-blue 4.9.1,4.9.1
HPCG 3.1,3.1,3.1,3.1
HPL 2.3,2.3,2.3,2.3
HTSeq 0.13.5
HTSlib 1.11,1.11,1.12,1.16,1.17,1.21
HarfBuzz 2.6.7,5.3.1
Harminv 1.4.1,1.4.2
HepMC3 3.2.6
Highway 1.0.3
HyPhy 2.5.62
Hypre 2.20.0,2.27.0
ICU 67.1,72.1,75.1
IDBA-UD 1.1.3
IGV 2.16.0,2.16.2,2.17.4,2.19.1
IMOD 4.11.15,4.11.16,4.11.24_RHEL7,4.11.24,4.12.56_RHEL7,4.12.62_RHEL8
IOR 4.0.0,4.0.0
IPython 7.18.1,8.14.0
IQ-TREE 2.1.2
ISA-L 2.30.0
ISL 0.23,0.26
ImageMagick 7.0.10,7.1.0
Imath 3.1.6
Infernal 1.1.4
IsoNet 0.2.1
JAGS 4.3.0,4.3.2
Jansson 2.14
JasPer 2.0.24,4.0.0
Java 1.8.345,8.345,11.0.16,17.0.4,21.0.2
JsonCpp 1.9.4,1.9.5
Judy 1.0.5,1.0.5
Julia 1.8.2,1.8.5,1.9.2,1.10.0,1.10.2,1.10.4,1.11.1
Jupyter-bundle 20230823
JupyterHub 4.0.1
JupyterLab 2.2.8,4.0.3
JupyterNotebook 7.0.3
KaHIP 3.14
Kalign 3.3.1,3.4.0
Kent_tools 411,461
Knitro 12.0.0,14.0.0
Kraken2 2.1.3
LAME 3.100,3.100
LAMMPS 2Aug2023,23Jun2022
LDC 0.17.6,1.25.1
LERC 4.0.0
LHAPDF 6.5.4
LLVM 11.0.0,14.0.6,15.0.5,16.0.4
LMDB 0.9.24,0.9.29
LSD2 2.2
LZO 2.10,2.10
Leptonica 1.83.0
LibSoup 3.0.8
LibTIFF 4.1.0,4.2.0,4.4.0
Libint 2.6.0
LittleCMS 2.11,2.14
Lua 5.4.2,5.4.4
M4 1.4.17,1.4.18,1.4.18,1.4.18,1.4.19,1.4.19,1.4.19
MACS2 2.2.7.1,2.2.9.1,2.2.9.1
MACS3 3.0.1
MAFFT 7.475,7.505
MAGeCK 0.5.9.5
MATIO 1.5.23
MATLAB 2018b,2020b,2022a,2022b,2023a,2023b
MCL 14.137
MCR R2019b.8,R2020b.5,R2021b.6,R2022a.6,R2023a
MDI 1.4.16
MEME 5.4.1
METIS 5.1.0,5.1.0,5.1.0
MINC 2.4.06
MMseqs2 13,14
MPB 1.11.1
MPC 1.2.1,1.3.1
MPFR 4.1.0,4.2.0
MPICH 4.2.1
MRIcron 1.0.20190902
MRtrix3 3.0.2
MUMPS 5.3.5,5.6.1
MUMmer 4.0.0rc1
MUSCLE 5.1
MadGraph5_aMC 2.9.16
MafFilter 1.3.1
Mako 1.1.3,1.2.4
MariaDB 10.5.8,10.11.2
Markdown 3.6
Mathematica 13.0.1
Maven 3.9.2
MaxBin 2.2.7
MaxQuant 2.4.2.0,2.4.2.0,2.6.1.0
Meep 1.24.0,1.26.0
Mercurial 5.7.1
Mesa 20.2.1,21.3.3,22.2.4
MeshLab 2023.12
Meson 0.55.3,0.62.1,0.64.0,1.3.1,1.4.0
Metal 2020
MitoGraph 3.0
Mono 6.8.0.105,6.8.0.123
MotionCor2 1.5.0,1.6.4
MotionCor3 1.0.1
MrBayes 3.2.6,3.2.7
MultiQC 1.10.1
NAG 29
NAMD 2.14,2.14,2.14,2.14
NASM 2.15.05,2.15.05
NBO 7.0
NCCL 2.8.3,2.8.4,2.10.3,2.16.2,2.16.2,2.16.2,2.18.3,2.23.4
NCO 5.2.1,5.2.1
NECI 20230620
NEdit 5.7
NGS 2.10.9
NIfTI 2.0.0
NLopt 2.6.2,2.6.2,2.7.0,2.7.1
NSPR 4.29,4.35
NSS 3.57,3.85
NVHPC 21.11,21.11,23.1,24.9
Net-core 3.1.101
NetLogo 6.4.0
Netpbm 10.86.41
Nextflow 22.10.6,23.04.2,23.10.1,24.04.2,24.04.4
Ninja 1.10.1,1.11.1,1.12.1
ORCA 5.0.3,5.0.3,5.0.4,5.0.4,6.0.0,6.0.1
OSU-Micro-Benchmarks 5.7,5.7,6.2,6.2
OligoArray 2.1
OligoArrayAux 3.8
OpenBLAS 0.3.12,0.3.21,0.3.21,0.3.27
OpenBabel 3.1.1
OpenCV 4.5.1,4.8.0
OpenEXR 2.5.5,3.1.5
OpenFOAM v2012,v2206,v2212
OpenJPEG 2.4.0,2.5.0
OpenLibm 0.7.5
OpenMM 7.5.0,7.5.1,7.5.1,7.5.1,7.7.0,8.0.0
OpenMPI 4.0.5,4.0.5,4.0.5,4.0.5,4.0.5,4.1.4,4.1.4,4.1.4
OpenPGM 5.2.122,5.2.122
OpenSSL 1.0,1.1,3
OpenSlide 3.4.1
OpenSlide-Java 0.12.4
OrthoFinder 2.5.4
Osi 0.108.8
PALEOMIX 1.3.8
PAML 4.10.7
PBZIP2 1.1.13
PCRE 8.44,8.45
PCRE2 10.35,10.40
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statsmodels 0.12.1,0.14.0
sympy 1.7.1,1.12
t-SNE-CUDA 3.0.1
tabix 0.2.6
tbb 2020.3,2021.9.0,2021.10.0,2021.13.0
tcsh 6.22.03,6.24.07
tensorboard 2.15.1
tesseract 5.3.0,5.3.0
texlive 20220321,20220321,20220321
time 1.9
tmux 3.4
topaz 0.2.5,0.2.5.20240417
torchvision 0.10.0,0.16.0
tqdm 4.56.2,4.60.0,4.64.1
ttyd 1.7.7
typing-extensions 3.7.4.3,4.9.0
umap-learn 0.5.3
unifdef 2.12
unrar 7.0.1
utf8proc 2.5.0,2.8.0
util-linux 2.36,2.38.1
virtualenv 20.23.1,20.26.2
watershed-workflow 1.4.0,1.4.0,1.5.0
wget 1.20.3
wpebackend-fdo 1.14.1
wrapt 1.15.0
wxPython 4.2.1
wxWidgets 3.1.4,3.1.4,3.2.0,3.2.2.1
x264 20201026,20230226
x265 3.3,3.5
xarray 2023.4.2,2023.4.2
xextproto 7.3.0
xmlf90 1.5.4
xorg-macros 1.19.2,1.19.3,1.20.1
xpdf 4.04
xprop 1.2.5,1.2.5
xtb 6.5.1,6.6.0,6.6.1,6.7.1
xxd 8.2.4220,9.0.1696
yaml-cpp 0.7.0,0.7.0
ycga-public 1.6.0,1.7.2,1.7.3,1.7.4,1.7.5,1.7.6,1.7.7
zlib 1.2.11,1.2.11,1.2.11,1.2.12,1.2.12,1.2.13,1.3.1,1.3.1
zstd 1.4.5,1.5.2,1.5.6
Package Versions
ACTC 1.1,1.1
ADMIXTURE 1.3.0
AFNI 23.2.08,2022.1.14,2023.1.01,2023.1.07,24.1.22
ANTLR 2.7.7
ANTs 2.3.5
APBS 1.4.2.1,3.4.1.Linux
APR 1.7.0,1.7.5
APR-util 1.6.1,1.6.3
ASE 3.22.1
ATK 2.36.0,2.38.0
AUGUSTUS 3.4.0
Abseil 20230125.2
AdapterRemoval 2.3.2
AlphaFold 2.2.3,2.2.3,2.2.4,2.2.4,2.3.2,2.3.2,3.0.0
AmberTools 23.6
Archive-Zip 1.68,1.68
AreTomo 1.3.4
AreTomo2 1.0.0
AreTomo3 2.0.6beta
Armadillo 10.2.1,11.4.3,11.4.3
Arrow 0.17.1,0.17.1,6.0.0,11.0.0,14.0.1,16.1.0
Aspera-CLI 3.9.6.1467.159c5b1
Aspera-Connect 4.2.4.265
AuthentiCT 1.0.1
Autoconf 2.69,2.71,2.72
Automake 1.16.2,1.16.5,1.16.5
Autotools 20200321,20220317,20231222
BBMap 38.90
BCFtools 1.11,1.16,1.21
BEDOPS 2.4.41
BEDTools 2.30.0
BGEN-enkre 1.1.7
BLAST 2.2.26
BLAST+ 2.13.0,2.14.1,2.15.0
BLAT 3.5,3.5
BLIS 0.9.0,1.0
BLT 20220626
BWA 0.7.17,0.7.17,0.7.17
BamTools 2.5.1,2.5.1,2.5.2
BaseSpaceCLI 1.5.3
Bazel 3.7.2,5.4.1,6.1.0,6.3.1
Beast 2.6.3,2.6.3,2.6.7,2.7.4,2.7.6
BeautifulSoup 4.11.1
Bio-DB-BigFile 1.07,1.07
Bio-DB-HTS 3.01,3.01
BioPP 2.4.1
BioPerl 1.7.8,1.7.8
Biopython 1.78,1.79,1.81,1.83
Bismark 0.24.0
Bison 3.0.4,3.0.4,3.0.5,3.7.1,3.7.1,3.8.2,3.8.2,3.8.2
Blender 4.0.1,4.2.1
Block 1.5.3
Blosc 1.21.0,1.21.3
Blosc2 2.8.0
Boost 1.74.0,1.74.0,1.74.0,1.74.0,1.74.0,1.81.0,1.81.0,1.81.0,1.83.0,1.85.0,1.86.0
Boost.MPI 1.81.0,1.81.0
Boost.Python 1.74.0,1.81.0
Boost.Python-NumPy 1.74.0,1.81.0
Bowtie 1.3.0,1.3.0,1.3.1
Bowtie2 2.3.4.3,2.4.2,2.4.2,2.5.1
Brotli 1.0.9,1.0.9
Brunsli 0.1
Bsoft 2.1.4
CAMPARI 4.0
CCP4 8.0.011,8.0.015
CD-HIT 4.8.1
CDO 2.2.2
CESM 2.1.3,2.1.3
CESM-deps 2,2
CFITSIO 3.48,4.2.0
CGAL 4.14.3,4.14.3,5.2,5.2.4,5.5.2
CLHEP 2.4.4.0,2.4.6.4
CMake 3.18.4,3.18.4,3.20.1,3.24.3,3.29.3
COMSOL 5.2a,5.2a
CONN 22a
CP2K 8.1
CPPE 0.3.1
CREST 3.0.1,3.0.2
CTFFIND 4.1.14,4.1.14,4.1.14,4.1.14,4.1.14
CUDA 10.1.243,11.1.1,11.3.1,11.8.0,12.0.0,12.1.1,12.6.0
CUDAcore 11.1.1,11.3.1
CUnit 2.1
Cartopy 0.20.3,0.22.0
Catch2 2.13.10
Cbc 2.10.5
CellRanger 3.0.2,6.1.2,7.0.0,7.0.1,7.1.0,7.2.0,8.0.1
CellRanger-ARC 2.0.2
Cereal 1.3.2,1.3.2
Cgl 0.60.7
CharLS 2.2.0,2.4.2
CheMPS2 1.8.12
Check 0.15.2,0.15.2
Chimera 1.16
ChimeraX 1.6.1,1.7,1.8
Clang 11.0.1,13.0.1,15.0.5,16.0.4,16.0.4
Clp 1.17.8
Code-Server 4.7.0,4.7.0,4.16.1,4.17.0
CoinUtils 2.11.9
Compress-Raw-Zlib 2.202,2.202
CoordgenLibs 3.0.2
Coot 0.9.7,0.9.8.6
CppUnit 1.15.1
Cufflinks 20190706
Cython 0.29.22,3.0.8,3.0.10
Cytoscape 3.9.1
DB 18.1.40,18.1.40
DBD-mysql 4.050,4.050
DB_File 1.855
DBus 1.13.18,1.15.2
DIAMOND 2.0.15,2.1.7
DMTCP 3.0.0,3.0.0
DSSP 4.2.1,4.4.7
Dice 20240101
Doxygen 1.8.20,1.9.5
EDirect 20.4.20230912,20.5.20231006,22.8.20241011
EIGENSOFT 7.2.1
ELPA 2020.11.001,2020.11.001,2021.11.001,2022.05.001
EMAN 1.9
EMAN2 2.91,2.99.47
EMBOSS 6.6.0
ESM-2 2.0.0
ESMF 8.3.0,8.3.0
EasyBuild 4.6.2,4.7.0,4.7.1,4.7.2,4.8.0,4.8.1,4.8.2,4.9.0,4.9.1,4.9.2,4.9.3
Eigen 3.3.8,3.3.9,3.4.0,3.4.0,3.4.0
El-MAVEN 0.12.1beta
Emacs 28.1,28.2
ExifTool 12.58,12.70
Exodus 20240403,20240403
FASTX-Toolkit 0.0.14
FFTW 2.1.5,2.1.5,2.1.5,2.1.5,3.3.8,3.3.8,3.3.8,3.3.8,3.3.8,3.3.10,3.3.10,3.3.10,3.3.10,3.3.10
FFTW.MPI 3.3.10,3.3.10,3.3.10
FFmpeg 4.3.1,5.1.2
FHI-aims 231212_1
FLAC 1.3.3,1.4.2
FLASH 2.2.00
FLTK 1.3.5,1.3.8
FRE-NCtools 2024.05
FSL 6.0.5.2,6.0.5.2,6.0.7.9
FTGL 2.3,2.4.0
Faiss 1.7.4
FastME 2.1.6.3
FastQC 0.11.9,0.12.1
FastUniq 1.1
Fiji 2.14.0,20221201,20230801
Fiona 1.9.2
Flask 2.2.3
FlexiBLAS 3.2.1,3.2.1,3.4.4
FragGeneScan 1.31
FreeImage 3.18.0,3.18.0
FreeSurfer dev,dev,7.3.2,7.4.1
FreeXL 2.0.0
FriBidi 1.0.10,1.0.12
GATK 3.8,4.2.0.0,4.2.6.1,4.4.0.0,4.5.0.0,4.6.0.0
GCC 10.2.0,12.2.0,13.3.0
GCCcore 7.3.0,10.2.0,12.2.0,13.3.0
GCTA 1.94.1
GConf 3.2.6
GDAL 3.2.1,3.6.2
GDB 10.1,13.2
GDCM 3.0.21
GDRCopy 2.1,2.3,2.3.1,2.4.1
GEOS 3.9.1,3.11.1
GL2PS 1.4.2,1.4.2
GLM 0.9.9.8
GLPK 4.65,5.0
GLib 2.66.1,2.75.0
GLibmm 2.49.7
GMP 6.2.0,6.2.1
GObject-Introspection 1.66.1,1.66.1,1.74.0
GRASS 8.2.0
GROMACS 2021.5,2023.3
GSEA 4.3.2
GSL 2.5,2.6,2.6,2.6,2.7,2.7,2.7
GST-libav 1.18.4,1.22.1
GST-plugins-bad 1.22.5
GST-plugins-base 1.18.4,1.18.4,1.22.1,1.22.1
GST-plugins-good 1.18.4,1.22.1
GStreamer 1.18.4,1.18.4,1.22.1,1.22.1
GTK+ 3.24.23
GTK2 2.24.33
GTK3 3.24.35
GTK4 4.11.3
GTS 0.7.6
Garfield++ 5.0
Gaussian 16,16
Gctf 1.18,1.18
Gdk-Pixbuf 2.40.0,2.40.0,2.42.10
Geant4 10.7.1
Geant4-data 11.3
GenomeTools 1.6.1
Ghostscript 9.53.3,10.0.0
GitPython 3.1.31
Globus-CLI 3.18.0,3.30.1
GnuTLS 3.7.8
Go 1.17.6,1.21.1,1.21.4,1.22.1
Grace 5.1.25
Gradle 8.6
Graphene 1.10.8
GraphicsMagick 1.3.36
Graphviz 2.47.0
Guile 2.2.7,3.0.9,3.0.9
Gurobi 9.1.2,10.0.3
HDF 4.2.15,4.2.15
HDF5 1.10.7,1.10.7,1.10.7,1.10.7,1.14.0,1.14.0,1.14.0,1.14.0
HDFView 3.3.1
HH-suite 3.3.0,3.3.0,3.3.0
HISAT-3N 20221013
HISAT2 2.2.1
HMMER 3.3.2,3.3.2,3.4
HOOMD-blue 4.9.1,4.9.1
HPCG 3.1,3.1,3.1,3.1
HPL 2.3,2.3,2.3,2.3
HTSeq 0.13.5
HTSlib 1.11,1.11,1.12,1.16,1.17,1.21
HarfBuzz 2.6.7,5.3.1
Harminv 1.4.1,1.4.2
HepMC3 3.2.6
Highway 1.0.3
HyPhy 2.5.62
Hypre 2.20.0,2.27.0
ICU 67.1,72.1,75.1
IDBA-UD 1.1.3
IGV 2.16.0,2.16.2,2.17.4,2.19.1
IMOD 4.11.15,4.11.16,4.11.24_RHEL7,4.11.24,4.12.56_RHEL7,4.12.62_RHEL8
IOR 4.0.0,4.0.0
IPython 7.18.1,8.14.0
IQ-TREE 2.1.2
ISA-L 2.30.0
ISL 0.23,0.26
ImageMagick 7.0.10,7.1.0
Imath 3.1.6
Infernal 1.1.4
IsoNet 0.2.1
JAGS 4.3.0,4.3.2
Jansson 2.14
JasPer 2.0.24,4.0.0
Java 1.8.345,8.345,11.0.16,17.0.4,21.0.2
JsonCpp 1.9.4,1.9.5
Judy 1.0.5,1.0.5
Julia 1.8.2,1.8.5,1.9.2,1.10.0,1.10.2,1.10.4,1.11.1
Jupyter-bundle 20230823
JupyterHub 4.0.1
JupyterLab 2.2.8,4.0.3
JupyterNotebook 7.0.3
KaHIP 3.14
Kalign 3.3.1,3.4.0
Kent_tools 411,461
Knitro 12.0.0,14.0.0
Kraken2 2.1.3
LAME 3.100,3.100
LAMMPS 2Aug2023,23Jun2022
LDC 0.17.6,1.25.1
LERC 4.0.0
LHAPDF 6.5.4
LLVM 11.0.0,14.0.6,15.0.5,16.0.4
LMDB 0.9.24,0.9.29
LSD2 2.2
LZO 2.10,2.10
Leptonica 1.83.0
LibSoup 3.0.8
LibTIFF 4.1.0,4.2.0,4.4.0
Libint 2.6.0
LittleCMS 2.11,2.14
Lua 5.4.2,5.4.4
M4 1.4.17,1.4.18,1.4.18,1.4.18,1.4.19,1.4.19,1.4.19
MACS2 2.2.7.1,2.2.9.1,2.2.9.1
MACS3 3.0.1
MAFFT 7.475,7.505
MAGeCK 0.5.9.5
MATIO 1.5.23
MATLAB 2018b,2020b,2022a,2022b,2023a,2023b
MCL 14.137
MCR R2019b.8,R2020b.5,R2021b.6,R2022a.6,R2023a
MDI 1.4.16
MEME 5.4.1
METIS 5.1.0,5.1.0,5.1.0
MINC 2.4.06
MMseqs2 13,14
MPB 1.11.1
MPC 1.2.1,1.3.1
MPFR 4.1.0,4.2.0
MPICH 4.2.1
MRIcron 1.0.20190902
MRtrix3 3.0.2
MUMPS 5.3.5,5.6.1
MUMmer 4.0.0rc1
MUSCLE 5.1
MadGraph5_aMC 2.9.16
MafFilter 1.3.1
Mako 1.1.3,1.2.4
MariaDB 10.5.8,10.11.2
Markdown 3.6
Mathematica 13.0.1
Maven 3.9.2
MaxBin 2.2.7
MaxQuant 2.4.2.0,2.4.2.0,2.6.1.0
Meep 1.24.0,1.26.0
Mercurial 5.7.1
Mesa 20.2.1,21.3.3,22.2.4
MeshLab 2023.12
Meson 0.55.3,0.62.1,0.64.0,1.3.1,1.4.0
Metal 2020
MitoGraph 3.0
Mono 6.8.0.105,6.8.0.123
MotionCor2 1.5.0,1.6.4
MotionCor3 1.0.1
MrBayes 3.2.6,3.2.7
MultiQC 1.10.1
NAG 29
NAMD 2.14,2.14,2.14,2.14
NASM 2.15.05,2.15.05
NBO 7.0
NCCL 2.8.3,2.8.4,2.10.3,2.16.2,2.16.2,2.16.2,2.18.3,2.23.4
NCO 5.2.1,5.2.1
NECI 20230620
NEdit 5.7
NGS 2.10.9
NIfTI 2.0.0
NLopt 2.6.2,2.6.2,2.7.0,2.7.1
NSPR 4.29,4.35
NSS 3.57,3.85
NVHPC 21.11,21.11,23.1,24.9
Net-core 3.1.101
NetLogo 6.4.0
Netpbm 10.86.41
Nextflow 22.10.6,23.04.2,23.10.1,24.04.2,24.04.4
Ninja 1.10.1,1.11.1,1.12.1
ORCA 5.0.3,5.0.3,5.0.4,5.0.4,6.0.0,6.0.1
OSU-Micro-Benchmarks 5.7,5.7,6.2,6.2
OligoArray 2.1
OligoArrayAux 3.8
OpenBLAS 0.3.12,0.3.21,0.3.21,0.3.27
OpenBabel 3.1.1
OpenCV 4.5.1,4.8.0
OpenEXR 2.5.5,3.1.5
OpenFOAM v2012,v2206,v2212
OpenJPEG 2.4.0,2.5.0
OpenLibm 0.7.5
OpenMM 7.5.0,7.5.1,7.5.1,7.5.1,7.7.0,8.0.0
OpenMPI 4.0.5,4.0.5,4.0.5,4.0.5,4.0.5,4.1.4,4.1.4,4.1.4
OpenPGM 5.2.122,5.2.122
OpenSSL 1.0,1.1,3
OpenSlide 3.4.1
OpenSlide-Java 0.12.4
OrthoFinder 2.5.4
Osi 0.108.8
PALEOMIX 1.3.8
PAML 4.10.7
PBZIP2 1.1.13
PCRE 8.44,8.45
PCRE2 10.35,10.40
PDBFixer 1.7
PEAR 0.9.11
PEET 1.15.0,1.16.0a
PETSc 3.15.0,3.17.4,3.20.3
PGI 18.10,18.10
PIPseeker 2.1.4
PKTOOLS 2.6.7.6,2.6.7.6
PLINK 1.9b_6.21,2_avx2_20221024
PLUMED 2.6.2,2.7.0,2.7.3,2.9.0,2.9.2
PMIx 5.0.2
POV-Ray 3.7.0.8,3.7.0.10
PRINSEQ 0.20.4
PROJ 7.2.1,9.1.1
PRRTE 3.0.5
PYTHIA 8.309
Pandoc 2.13,3.1.2
Pango 1.47.0,1.50.12
ParMETIS 4.0.3
ParaView 5.8.1,5.11.0
PartitionFinder 2.1.1
Perl 5.28.0,5.32.0,5.32.0,5.32.1,5.36.0,5.36.0,5.36.1,5.38.0,5.38.2
Perl-bundle-CPAN 5.36.1
Phenix 1.20.1,1.20.1
PhyloBayes 4.1e
Pillow 8.0.1,9.4.0
Pillow-SIMD 7.1.2,9.5.0
Pint 0.22
PnetCDF 1.12.2,1.12.3,1.13.0,1.13.0
PostgreSQL 13.2,15.2
PuLP 2.7.0
PyBLP 1.1.0
PyBerny 0.6.3
PyCairo 1.24.0
PyCharm 2022.3.2,2024.3.2
PyCheMPS2 1.8.12
PyGObject 3.44.1
PyInstaller 6.3.0
PyOpenGL 3.1.5,3.1.6
PyQt5 5.15.4,5.15.7
PySCF 2.4.0
PyTables 3.5.2,3.8.0
PyTorch 1.9.0,1.13.1,2.1.2,2.1.2
PyYAML 5.3.1,6.0
PycURL 7.45.2
Pylada-light 2023Oct13
Pysam 0.16.0.1,0.16.0.1,0.16.0.1,0.21.0
Python 2.7.18,2.7.18,3.8.6,3.8.6,3.10.8,3.10.8,3.10.8,3.10.8,3.12.3
Python-bundle-PyPI 2023.06,2024.06
QCA 2.3.5
QScintilla 2.11.6
QTLtools 1.3.1
Qhull 2020.2,2020.2
Qt5 5.14.2,5.15.7
Qt5Webkit 5.212.0,5.212.0
QtKeychain 0.13.2
QtPy 2.3.0
Qtconsole 5.4.0
QuPath 0.5.0,0.5.1
QuantumESPRESSO 6.8,7.0,7.2
Quip 1.1.8,1.1.8,20171217
Qwt 6.1.5,6.2.0
R 4.2.0,4.2.0,4.3.2,4.3.2,4.4.1,4.4.1
R-INLA 24.01.18
R-bundle-Bioconductor 3.15,3.16,3.18,3.19
R-bundle-CRAN 2023.12,2024.06
RDKit 2022.09.5
RE2 2023
RECON 1.08
RELION 3.0.8,3.1.4,3.1.4,3.1.4,4.0.0,4.0.1,4.0.1,5beta,5beta,5.0.0
RELION-composite-masks 5.0.0
RMBlast 2.11.0
ROOT 6.26.06,6.26.10
RSEM 1.3.3
RStudio 2022.07.2,2022.12.0,2024.04.2
RStudio-Server 2024.04.1+748
RapidJSON 1.1.0,1.1.0
Regenie 4.0
RepeatMasker 4.1.2
RepeatScout 1.0.6
ResMap 1.95
RevBayes 1.1.1,1.2.1,1.2.2,1.2.2
Rivet 3.1.9
Rmath 4.0.4,4.4.1
Rosetta 3.12
Ruby 2.7.2,3.0.5,3.2.2
Rust 1.52.1,1.65.0,1.70.0,1.75.0,1.78.0
SAMtools 1.11,1.11,1.16,1.16.1,1.18,1.20,1.21
SAS 9.4M8,9.4
SBGrid 2.11.2
SCOTCH 6.1.0,7.0.3
SCons 4.0.1,4.5.2
SDL2 2.0.14,2.26.3
SHAPEIT 2.r904.glibcv2.17
SHAPEIT4 4.2.2
SLEPc 3.15.0,3.17.2
SMRT-Link 11.1.0.166339,12.0.0
SOCI 4.0.3,4.0.3
SPAGeDi 1.5d
SPAdes 3.15.1,3.15.5
SPM 12.5_r7771
SQLite 3.33.0,3.39.4,3.45.3
SRA-Toolkit 2.10.9,3.0.10,3.1.1,3.1.1
STAR 2.7.6a,2.7.7a,2.7.8a,2.7.9a,2.7.11a,2.7.11a
STREAM 5.10
SWIG 4.0.2,4.1.1
Salmon 1.4.0
Sambamba 0.8.0
ScaFaCoS 1.0.1,1.0.4
ScaLAPACK 2.1.0,2.1.0,2.2.0,2.2.0,2.2.0
SciPy-bundle 2020.11,2020.11,2020.11,2020.11,2020.11,2021.05,2023.02,2024.05
Seaborn 0.12.2,0.13.2
Seq-Gen 1.3.4
SeqKit 2.3.1,2.8.1
Serf 1.3.9,1.3.9
Shapely 1.8.5.post1,2.0.1
Sherpa 3.0.0
Slicer 5.6.2
SpaceRanger 2.1.1
Spark 3.1.1,3.1.1,3.5.0,3.5.0,3.5.1,3.5.3,3.5.4
SpectrA 1.0.0,1.0.1
Stacks 2.59
Stata 17
StringTie 2.1.4
Subread 2.0.3
Subversion 1.14.0,1.14.3
SuiteSparse 5.8.1,5.13.0
Summovie 1.0.2
SuperLU_DIST 8.1.2
Szip 2.1.1,2.1.1
TOMO3D 01
TOPAS 3.9
TRF 4.09.1
TRUST4 1.0.7
TWL-NINJA 0.97
Tcl 8.6.10,8.6.12,8.6.14
TensorFlow 2.5.0,2.7.1,2.13.0,2.15.1
TensorRT 8.6.1
Tk 8.6.10,8.6.12
Tkinter 3.8.6,3.10.8
TopHat 2.1.2,2.1.2
TotalView 2023.3.10
TreeMix 1.13
Trilinos 13.4.1
Trim_Galore 0.6.7
Trimmomatic 0.39
UCC 1.1.0,1.3.0
UCC-CUDA 1.1.0,1.1.0,1.3.0
UCX 1.9.0,1.9.0,1.10.0,1.13.1,1.16.0
UCX-CUDA 1.10.0,1.13.1,1.13.1,1.13.1,1.16.0
UDUNITS 2.2.26,2.2.28
USEARCH 11.0.667
UnZip 6.0,6.0,6.0
Unblur 1.0.2
VASP 5.4.1,5.4.4,5.4.4,6.3.0,6.4.2
VASPsol 5.4.1
VCFtools 0.1.16
VDJtools 1.2.1
VEP 107,110,112,112.0
VESTA 3.5.8
VMD 1.9.4a57
VSCode 1.95.3,1.96.2,1.96.4
VTK 9.0.1,9.0.1,9.2.6
VTune 2023.2.0
Valgrind 3.16.1,3.21.0
ViennaRNA 2.5.1
Vim 9.0.1434
VisPy 0.12.2
Voro++ 0.4.6,0.4.6
WRF 4.4.1
Wannier90 3.1.0,3.1.0
Wayland 1.22.0
Waylandpp 1.0.0
WebKitGTK+ 2.40.4
X11 20201008,20221110
XCFun 2.1.1
XGBoost 2.1.1,2.1.1
XML-LibXML 2.0206,2.0208
XMedCon 0.25.0
XZ 5.2.5,5.2.7,5.4.5
Xerces-C++ 3.1.4,3.2.3,3.2.4
Xvfb 1.20.9,21.1.6
YODA 1.9.9
Yasm 1.3.0,1.3.0
Z3 4.8.10,4.10.2,4.12.2,4.12.2
ZeroMQ 4.3.3,4.3.4
Zip 3.0,3.0
aiohttp 3.8.5
alibuild 1.17.11
angsd 0.940
anndata 0.10.5.post1
annovar 2019Oct24,20200607
ant 1.10.9,1.10.12,1.10.12
archspec 0.1.2,0.2.0
aria2 1.35.0,1.36.0
arpack-ng 3.8.0,3.8.0,3.8.0
arrow-R 6.0.0.2,11.0.0.3,14.0.0.2,16.1.0
at-spi2-atk 2.38.0,2.38.0
at-spi2-core 2.38.0,2.46.0
attr 2.4.48,2.5.1
attrdict3 2.0.2
awscli 2.1.23,2.13.20,2.15.2
bases2Fastq v1.5.1,v1.5.1,v2.0.0
bcl2fastq2 2.20.0,2.20.0
beagle-lib 3.1.2,3.1.2,3.1.2,3.1.2,4.0.0,4.0.1
binutils 2.28,2.30,2.30,2.35,2.35,2.39,2.39,2.40,2.42,2.42
biswebnode 1.3.0
bokeh 2.2.3,2.2.3,3.2.1
boto3 1.20.13,1.26.163
breseq 0.35.5,0.38.0,0.38.1
bsddb3 6.2.9,6.2.9
bzip2 1.0.8,1.0.8,1.0.8
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cURL 7.55.1,7.72.0,7.86.0,7.86.0,8.7.1
cairo 1.16.0,1.16.0,1.17.4
ccache 4.6.3
cffi 1.16.0
code-server 4.91.1,4.95.3
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cppy 1.2.1
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cryptography 41.0.1,42.0.8
cuDNN 8.0.5.39,8.2.1.32,8.7.0.84,8.8.0.121,8.9.2.26,9.5.0.50
cuTENSOR 1.7.0.1,2.0.2.5
cutadapt 3.4
cxxopts 3.0.0
cyrus-sasl 2.1.28
dSQ 1.05
dask 2021.2.0,2021.2.0,2023.7.1
dbus-glib 0.112
dcm2niix 1.0.20211006,1.0.20230411
dedalus 3.0.2
deepTools 3.5.1,3.5.5
deml 1.1.4
dftd4 3.4.0
dill 0.3.7
dlib 19.22,19.22,19.22
dorado 0.5.3
dotNET-Core 7.0.410
dotNET-SDK 3.1.300
double-conversion 3.1.5,3.2.1
dtcmp 1.1.2,1.1.4
ecBuild 3.8.0
ecCodes 2.31.0
einops 0.7.0
elbencho 2.0,3.0
elfutils 0.183,0.189
eman
enchant-2 2.3.3
ensmallen 2.21.1,2.21.1
exiv2 0.27.5,0.28.0
expat 2.2.5,2.2.9,2.4.9,2.6.2
expecttest 0.1.3
fastjet 3.4.0
fastjet-contrib 1.049
fastp 0.23.2
ffnvcodec 11.1.5.2
file 5.39,5.43
flatbuffers 1.12.0,23.1.4,23.5.26
flatbuffers-python 1.12,2.0,23.1.4,23.5.26
flex 2.6.3,2.6.4,2.6.4,2.6.4,2.6.4,2.6.4
flit 3.9.0,3.9.0
fmriprep 23.1.0,23.1.4,23.2.1,24.1.0
fontconfig 2.13.92,2.14.1
foss 2020b,2022b,2024a
fosscuda 2020b
freeglut 3.2.1,3.4.0
freetype 2.10.3,2.10.3,2.12.1
gc 8.0.4,8.2.2,8.2.4
gcccuda 2020b,2022b
gcloud 382.0.0,494.0.0
gettext 0.19.8.1,0.21,0.21,0.21.1,0.21.1,0.22.5,0.22.5
gfbf 2022b,2024a
gflags 2.2.2
giflib 5.2.1,5.2.1
git 2.28.0,2.30.0,2.38.1,2.45.1
git-lfs 3.2.0,3.5.1
glew 2.1.0,2.2.0
glib-networking 2.72.1
glibc 2.34
gmpy2 2.1.0b5,2.1.5
gmsh 4.11.1,4.11.1
gnuplot 5.4.1,5.4.6
gomkl 2022b
gompi 2020b,2022b,2024a
gompic 2020b
googletest 1.10.0,1.12.1
gperf 3.1,3.1
gperftools 2.14
gpu_burn 20231110
graphite2 1.3.14,1.3.14
groff 1.22.4,1.22.4
grpcio 1.59.3
gsutil 4.42,5.10
gzip 1.10,1.12,1.13
h5py 3.1.0,3.1.0,3.2.1,3.8.0
hatchling 1.18.0,1.24.2
help2man 1.47.4,1.47.16,1.49.2,1.49.3
hiredis 1.2.0
hmmlearn 0.3.0
hunspell 1.7.1
hwloc 2.2.0,2.8.0,2.10.0
hypothesis 5.41.2,5.41.5,6.1.1,6.68.2,6.103.1
iccifort 2020.4.304
igraph 0.9.5,0.10.4,0.10.4,0.10.6,0.10.6,0.10.10
iimkl 2022b
iimpi 2020b,2022b,2024a
imageio 2.9.0,2.31.1
imgaug 0.4.0
imkl 2020.4.304,2020.4.304,2020.4.304,2022.2.1,2022.2.1,2024.2.0
imkl-FFTW 2022.2.1,2024.2.0
impi 2019.9.304,2021.7.1,2021.13.0
inih 57
intel 2020b,2022b,2024a
intel-compilers 2022.2.1,2024.2.0
intltool 0.51.0,0.51.0
iomkl 2020b,2022b
iompi 2020b,2022b
jax 0.2.19,0.3.25,0.4.25,0.4.25
jbigkit 2.1,2.1
jemalloc 5.2.1,5.3.0
json-c 0.16
json-fortran 8.3.0
jupyter-resource-usage 1.0.0
jupyter-server 2.7.0
jupyter-server-proxy 3.2.2
jupyterlmod 4.0.3
kallisto 0.48.0
kim-api 2.2.1,2.3.0
kineto 0.4.0
leidenalg 0.8.8,0.10.2
lftp 4.9.2
libGDSII 0.21
libGLU 9.0.1,9.0.2
libGridXC 0.9.6
libPSML 1.1.10
libRmath 4.1.0
libXp 1.0.3
libaec 1.0.6,1.0.6
libaio 0.3.112,0.3.113
libarchive 3.4.3,3.6.1,3.7.4
libavif 0.11.1,0.11.1
libcerf 1.14,2.3
libcifpp 5.0.6,7.0.3
libcint 5.5.0
libcircle 0.3,0.3
libctl 4.5.1
libdap 3.20.11
libdeflate 1.7,1.15
libdrm 2.4.102,2.4.114
libepoxy 1.5.4,1.5.10
libev 4.33
libevent 2.1.12,2.1.12,2.1.12
libexif 0.6.24,0.6.24
libfabric 1.11.0,1.16.1,1.21.0
libffi 3.3,3.4.4,3.4.5
libgcrypt 1.10.1
libgd 2.3.0,2.3.1,2.3.3
libgdiplus 6.1,6.1
libgeotiff 1.6.0,1.7.1
libgit2 1.1.0,1.5.0
libglvnd 1.3.2,1.6.0
libgpg-error 1.46
libharu 2.3.0
libiconv 1.16,1.17,1.17
libidn 1.41
libidn2 2.3.0,2.3.2
libjpeg-turbo 2.0.5,2.1.4
libleidenalg 0.11.1,0.11.1,0.11.1
libmcfp 1.2.2,1.3.3
libnsl 2.0.0
libogg 1.3.4,1.3.5
libopus 1.3.1
libpci 3.7.0
libpciaccess 0.16,0.17,0.18.1
libpng 1.2.59,1.5.30,1.6.37,1.6.38
libpsl 0.21.1
libreadline 8.0,8.2,8.2
librsvg 2.51.2
librttopo 1.1.0
libsigc++ 2.10.8
libsndfile 1.0.28,1.2.0
libsodium 1.0.18,1.0.18
libspatialindex 1.9.3
libspatialite 5.0.1
libtasn1 4.19.0
libtirpc 1.3.1,1.3.3
libtool 2.4.6,2.4.7,2.4.7
libunistring 0.9.10,1.1,1.1
libunwind 1.4.0,1.6.2
libvorbis 1.3.7,1.3.7
libwebkitgtk-1.0 1.2.4.9
libwebp 1.1.0,1.3.1
libwpe 1.14.1
libxc 4.3.4,4.3.4,5.1.2,5.1.5,6.1.0,6.1.0
libxml++ 2.40.1
libxml2 2.9.10,2.9.14,2.10.3,2.12.7
libxslt 1.1.34,1.1.37
libxsmm 1.16.1
libyaml 0.2.5,0.2.5
libzip 1.9.2
liftOver 2023
loompy 3.0.7
lpsolve 5.5.2.11
lwgrp 1.0.3,1.0.5
lxml 4.9.2
lz4 1.9.2,1.9.4,1.9.4
maeparser 1.3.1
magma 2.5.4,2.7.1,2.7.1
make 4.3,4.3,4.4.1,4.4.1
makeinfo 6.7,6.7,7.0.3
mapDamage 2.2.1
matlab-proxy 0.12.1,0.13.1,0.14.0,0.15.1,0.18.2,0.19.0
matplotlib 3.3.3,3.3.3,3.3.3,3.7.0
maturin 1.1.0,1.4.0,1.6.0
mctc-lib 0.3.1
meson-python 0.11.0,0.15.0,0.16.0
mfold_util 4.7
mgltools
miniconda 22.9.0,22.11.1,23.1.0,23.3.1,23.5.2,24.3.0,24.3.0,24.7.1,24.9.2
minimap2 2.22
minizip 1.1
ml_dtypes 0.3.1
mlpack 4.3.0,4.3.0
mm-common 1.0.4
mongolite 20240424,20240424
morphosamplers 0.0.10
motif 2.3.8,2.3.8
mpi4py 3.1.4
mpifileutils 0.11.1,0.11.1
mrc 1.3.6,1.3.13
mrcfile 1.3.0,1.5.0
mstore 0.2.0
muParser 2.3.4
multicharge 0.2.0
nanobind 2.1.0
napari 0.4.18
nbclassic 1.0.0
ncbi-vdb 2.10.9,3.0.10,3.1.1
ncdu 1.18
ncompress 4.2.4.6
ncurses 5.9,5.9,6.0,6.2,6.2,6.3,6.3,6.5,6.5
ncview 2.1.8,2.1.8
nedit-ng 2020.1
netCDF 4.6.1,4.7.4,4.7.4,4.7.4,4.7.4,4.9.0,4.9.0,4.9.0
netCDF-C++ 4.2
netCDF-C++4 4.3.1,4.3.1
netCDF-Fortran 4.4.4,4.5.3,4.5.3,4.5.3,4.5.3,4.6.0,4.6.0,4.6.0
netcdf4-python 1.6.3
nettle 3.6,3.8.1
networkx 2.5,2.5,2.5.1,3.0
nf-core 2.14.1
nghttp2 1.48.0
nghttp3 0.6.0
ngtcp2 0.7.0
nlohmann_json 3.11.2
nodejs 12.19.0,18.12.1,20.11.1
nsync 1.24.0,1.26.0
numactl 2.0.13,2.0.16,2.0.18
numba 0.58.1
nvofbf 2023.01
nvompi 2023.01
occt 7.5.0p1,7.5.0p1
p11-kit 0.24.1
p7zip 17.04
pam-devel 1.3.1
parallel 20210322
parameterized 0.9.0
patchelf 0.12,0.17.2,0.18.0
phonopy 2.27.0
phyx 1.3
picard 2.18.14,2.25.6
pigz 2.6,2.7
pixman 0.40.0,0.42.2
pkg-config 0.29.2,0.29.2
pkgconf 1.8.0,1.8.0,1.9.3,2.2.0
pkgconfig 1.5.1,1.5.5
plotly.py 4.14.3,5.13.1
pocl 1.6,1.8,5.0
poetry 1.5.1,1.7.1,1.8.3
poppler 21.06.1,21.06.1,22.12.0
popt 1.16
postgis 3.4.2
printproto 1.0.5
prompt-toolkit 3.0.36
protobuf 3.14.0,3.19.4,23.0
protobuf-python 3.14.0,3.19.4,4.23.0
psycopg2 2.9.9
pugixml 1.12.1
py-cpuinfo 9.0.0
py3Dmol 2.0.1.post1,2.1.0
pyFFTW 0.13.1
pySCENIC 0.12.1
pybind11 2.6.0,2.6.2,2.10.3,2.12.0,2.12.0
pydantic 2.5.3
pyfaidx 0.7.2.1
pyproj 3.5.0
pytest 7.4.2
pytest-flakefinder 1.1.0
pytest-rerunfailures 12.0
pytest-shard 0.1.2
pytest-workflow 2.0.1
pytest-xdist 2.3.0,3.3.1
python-igraph 0.9.8,0.11.4
python-isal 0.11.1
qrupdate 1.1.2
rMATS-turbo 4.1.1,4.1.2,4.2.0
rasterio 1.3.8
re2c 2.0.3,3.0
rpmrebuild 2.16,2.18
ruamel.yaml 0.17.21,0.17.21
samblaster 0.1.26
scanpy 1.9.8
scikit-build 0.11.1,0.11.1,0.17.2,0.17.6
scikit-build-core 0.9.3
scikit-image 0.18.1,0.18.1,0.18.3,0.21.0
scikit-learn 0.20.4,0.23.2,0.23.2,0.24.1,1.2.1
segemehl 0.3.4
seqtk 1.3
setuptools 64.0.3
setuptools-rust 1.9.0
shRNA 0.1
siscone 3.0.5
slurm-drmaa 1.1.3
snakemake 7.32.3
snappy 1.1.8,1.1.9,1.1.10
sparsehash 2.0.4
spglib-python 2.0.2,2.3.1
statsmodels 0.12.1,0.14.0
sympy 1.7.1,1.12
t-SNE-CUDA 3.0.1
tabix 0.2.6
tbb 2020.3,2021.9.0,2021.10.0,2021.13.0
tcsh 6.22.03,6.24.07
tensorboard 2.15.1
tesseract 5.3.0,5.3.0
texlive 20220321,20220321,20220321
time 1.9
tmux 3.4
topaz 0.2.5,0.2.5.20240417
torchvision 0.10.0,0.16.0
tqdm 4.56.2,4.60.0,4.64.1
ttyd 1.7.7
typing-extensions 3.7.4.3,4.9.0
umap-learn 0.5.3
unifdef 2.12
unrar 7.0.1
utf8proc 2.5.0,2.8.0
util-linux 2.36,2.38.1
virtualenv 20.23.1,20.26.2
watershed-workflow 1.4.0,1.4.0,1.5.0
wget 1.20.3
wpebackend-fdo 1.14.1
wrapt 1.15.0
wxPython 4.2.1
wxWidgets 3.1.4,3.1.4,3.2.0,3.2.2.1
x264 20201026,20230226
x265 3.3,3.5
xarray 2023.4.2,2023.4.2
xextproto 7.3.0
xmlf90 1.5.4
xorg-macros 1.19.2,1.19.3,1.20.1
xpdf 4.04
xprop 1.2.5,1.2.5
xtb 6.5.1,6.6.0,6.6.1,6.7.1
xxd 8.2.4220,9.0.1696
yaml-cpp 0.7.0,0.7.0
ycga-public 1.6.0,1.7.2,1.7.3,1.7.4,1.7.5,1.7.6,1.7.7
zlib 1.2.11,1.2.11,1.2.11,1.2.12,1.2.12,1.2.13,1.3.1,1.3.1
zstd 1.4.5,1.5.2,1.5.6
Package Versions
AFNI 24.0.15,24.1.22,2023.1.07
ANTs 2.3.5
ATK 2.38.0
Armadillo 10.2.1,11.4.3
Arrow 11.0.0,14.0.1,16.1.0
Autoconf 2.69,2.71
Automake 1.16.2,1.16.5
Autotools 20200321,20220317
BCFtools 1.17
BLIS 0.9.0
BWA 0.7.17
BeautifulSoup 4.11.1
Bison 3.7.1,3.8.2,3.8.2
Boost 1.74.0,1.74.0,1.81.0
Brotli 1.0.9,1.0.9
Brunsli 0.1
CFITSIO 4.2.0
CMake 3.18.4,3.20.1,3.24.3
CUDA 11.1.1,12.0.0,12.1.1
CUDAcore 11.1.1
CharLS 2.4.2
Check 0.15.2,0.15.2
DB 18.1.40,18.1.40
DBus 1.13.18,1.15.2
Doxygen 1.8.20,1.9.5
EasyBuild 4.9.0,4.9.1,4.9.2,4.9.3
Eigen 3.3.8,3.3.9,3.4.0
Emacs 28.2
FFTW 3.3.8,3.3.8,3.3.10
FFTW.MPI 3.3.10
FFmpeg 4.3.1,5.1.2
FLAC 1.3.3,1.4.2
FSL 6.0.5.1,6.0.5.2,6.0.7.9
FlexiBLAS 3.2.1
FreeSurfer
FriBidi 1.0.10,1.0.12
GATK 4.5.0.0
GCC 10.2.0,12.2.0
GCCcore 10.2.0,12.2.0
GDAL 3.2.1,3.6.2
GDRCopy 2.1,2.3,2.3.1
GEOS 3.9.1,3.11.1
GLPK 4.65,5.0
GLib 2.66.1,2.75.0
GLibmm 2.49.7
GMP 6.2.0,6.2.1
GObject-Introspection 1.66.1,1.74.0
GSL 2.6,2.7
GST-plugins-bad 1.22.5
GST-plugins-base 1.22.1
GStreamer 1.22.1
GTK3 3.24.35
GTK4 4.11.3
GTS 0.7.6
Gdk-Pixbuf 2.40.0,2.42.10
Ghostscript 9.53.3,10.0.0
Globus-CLI 3.30.1
Go 1.17.6,1.21.2
Graphene 1.10.8
Graphviz 2.47.0
HDF 4.2.15,4.2.15
HDF5 1.10.7,1.10.7,1.14.0
HTSlib 1.17
HarfBuzz 2.6.7,5.3.1
Highway 1.0.3
Hypre 2.20.0
ICU 67.1,72.1
IPython 8.14.0
ITK 5.2.1
ImageMagick 7.0.10,7.1.0
Imath 3.1.6
JasPer 2.0.24,4.0.0
Java 11.0.16,17.0.4
LAME 3.100,3.100
LDC 1.24.0,1.35.0
LERC 4.0.0
LLVM 11.0.0,15.0.5
LibTIFF 4.1.0,4.4.0
LittleCMS 2.11,2.14
M4 1.4.18,1.4.19,1.4.19
MATLAB 2022b,2023a
MCR R2019b.8,R2019b.9
METIS 5.1.0
MPFR 4.1.0,4.2.0
MUMPS 5.3.5
Mako 1.1.3,1.2.4
Mesa 20.2.1,22.2.4
Meson 0.55.3,0.64.0
NASM 2.15.05,2.15.05
NLopt 2.6.2,2.7.0,2.7.1
NSPR 4.29
NSS 3.57
Netpbm 10.86.41
Nextflow 24.04.2
Ninja 1.10.1,1.11.1
OpenBLAS 0.3.12,0.3.21
OpenCV 4.8.0
OpenEXR 3.1.5
OpenFace 2.2.0
OpenJPEG 2.5.0
OpenMPI 4.0.5,4.0.5,4.1.4
OpenPGM 5.2.122
OpenSSL 1.1
PCRE 8.44,8.45
PCRE2 10.35,10.40
PETSc 3.15.0
PROJ 7.2.1,9.1.1
Pango 1.47.0,1.50.12
Perl 5.32.0,5.32.0,5.36.0
Pillow 9.4.0
PostgreSQL 15.2
PyCairo 1.24.0
PyGObject 3.44.1
PyQt5 5.15.7
PyYAML 6.0
Python 2.7.18,3.8.6,3.10.8,3.10.8
Qhull 2020.2
Qt5 5.14.2
Qwt 6.1.5
R 4.2.0,4.3.2,4.4.1
R-bundle-Bioconductor 3.18,3.19
R-bundle-CRAN 2023.12,2024.06
RE2 2023
RapidJSON 1.1.0
Rust 1.65.0
SAMtools 1.20
SAS 9.4M8,9.4
SCOTCH 6.1.0
SDL2 2.26.3
SPM 12.5_r7771
SQLite 3.33.0,3.39.4
SWIG 4.0.2
Sambamba 1.0.1
ScaLAPACK 2.1.0,2.1.0,2.2.0
SciPy-bundle 2020.11,2020.11,2023.02
Slicer 5.6.2
Spark 3.5.1,3.5.3,3.5.4
SuiteSparse 5.8.1
Szip 2.1.1,2.1.1
Tcl 8.6.10,8.6.12
Tk 8.6.10,8.6.12
Tkinter 3.10.8
UCC 1.1.0
UCX 1.9.0,1.9.0,1.13.1
UCX-CUDA 1.13.1
UDUNITS 2.2.26,2.2.28
UnZip 6.0,6.0
VTK 8.2.0,9.0.1,9.1.0
Wayland 1.22.0
X11 20201008,20221110
XZ 5.2.5,5.2.7
Xerces-C++ 3.2.4
Xvfb 1.20.9,21.1.6
Yasm 1.3.0,1.3.0
ZeroMQ 4.3.4
aiohttp 3.8.5
annovar 20200607
ant 1.10.12
arpack-ng 3.8.0,3.8.0
arrow-R 14.0.0.2,16.1.0
at-spi2-atk 2.38.0
at-spi2-core 2.46.0
attr 2.4.48
awscli 2.13.20
binutils 2.35,2.39,2.39
bzip2 1.0.8,1.0.8
cURL 7.72.0,7.86.0
cairo 1.16.0,1.17.4
cppy 1.2.1
cuDNN 8.8.0.121
dcm2niix 1.0.20230411
dlib 19.22
double-conversion 3.1.5
dtcmp 1.1.2
elfutils 0.189
expat 2.2.9,2.4.9
ffnvcodec 11.1.5.2
flex 2.6.4,2.6.4
fmriprep 23.2.1
fontconfig 2.13.92,2.14.1
foss 2020b,2022b
fosscuda 2020b
freeglut 3.2.1,3.4.0
freetype 2.10.3,2.12.1
gcccuda 2020b
gettext 0.21,0.21.1,0.21.1
gfbf 2022b
giflib 5.2.1
git 2.28.0,2.38.1
git-lfs 3.2.0
gompi 2020b,2022b
gompic 2020b
googletest 1.12.1
gperf 3.1,3.1
groff 1.22.4,1.22.4
gzip 1.10,1.12
h5py 3.1.0
help2man 1.47.16,1.49.2
hwloc 2.2.0,2.8.0
hypothesis 5.41.2,6.68.2
intltool 0.51.0,0.51.0
jbigkit 2.1,2.1
json-c 0.16
libGLU 9.0.1,9.0.2
libXp 1.0.3
libarchive 3.4.3,3.6.1
libcircle 0.3
libdeflate 1.15
libdrm 2.4.102,2.4.114
libepoxy 1.5.10
libevent 2.1.12
libfabric 1.11.0,1.16.1
libffi 3.3,3.4.4
libgd 2.3.0,2.3.1
libgeotiff 1.6.0,1.7.1
libgit2 1.1.0,1.5.0
libglvnd 1.3.2,1.6.0
libiconv 1.16,1.17
libjpeg-turbo 2.0.5,2.1.4
libogg 1.3.4,1.3.5
libopus 1.3.1
libpciaccess 0.16,0.17
libpng 1.2.59,1.6.37,1.6.38
libreadline 6.2,8.0,8.2
libsigc++ 2.10.8
libsndfile 1.0.28,1.2.0
libsodium 1.0.18
libtirpc 1.3.1,1.3.3
libtool 2.4.6,2.4.7
libunwind 1.4.0,1.6.2
libvorbis 1.3.7,1.3.7
libwebp 1.3.1
libxml++ 2.40.1
libxml2 2.9.10,2.10.3
libxslt 1.1.34,1.1.37
libyaml 0.2.5
lwgrp 1.0.3
lxml 4.9.2
lz4 1.9.2,1.9.4
make 4.4.1
makeinfo 6.7
matlab-proxy 0.14.0,0.15.1
matplotlib 3.7.0
miniconda 23.5.2,24.3.0,24.7.1
mm-common 1.0.4
motif 2.3.8
mpi4py 3.1.4
mpifileutils 0.11.1
ncurses 6.2,6.3,6.3
netCDF 4.7.4,4.9.0
nettle 3.6,3.8.1
networkx 3.0
nlohmann_json 3.11.2
nodejs 20.11.1
numactl 2.0.13,2.0.16
p7zip 17.04
patchelf 0.12,0.17.2
picard 3.0.0
pigz 2.7
pixman 0.40.0,0.42.2
pkg-config 0.29.2,0.29.2
pkgconf 1.8.0,1.9.3
pkgconfig 1.5.1
printproto 1.0.5
pybind11 2.6.0,2.10.3
re2c 2.0.3
ruamel.yaml 0.17.21
samblaster 0.1.26
scikit-build 0.17.2
snappy 1.1.8,1.1.9
tbb 2021.10.0
tcsh 6.24.07
utf8proc 2.8.0
util-linux 2.36,2.38.1
x264 20201026,20230226
x265 3.3,3.5
xextproto 7.3.0
xorg-macros 1.19.2,1.19.3
zlib 1.2.11,1.2.12,1.2.12
zstd 1.4.5,1.5.2
Package Versions
ATK 2.38.0
Abseil 20230125.2
Armadillo 11.4.3
Arrow 16.1.0
Autoconf 2.69,2.71
Automake 1.16.2,1.16.5
Autotools 20200321,20220317
BLIS 0.9.0
Bazel 6.3.1
Bison 3.7.1,3.8.2,3.8.2
Boost 1.81.0
Brotli 1.0.9
Brunsli 0.1
CFITSIO 4.2.0
CMake 3.18.4,3.24.3
CUDA 11.8.0,12.0.0,12.1.1,12.2.2
Clang 16.0.4
Code-Server 4.16.1
DB 18.1.40,18.1.40
DBus 1.15.2
Doxygen 1.9.5
ELPA 2022.05.001
EasyBuild 4.8.2,4.9.0,4.9.1,4.9.2,4.9.3
Eigen 3.4.0
Embree 2.17.7,3.13.4
FFTW 2.1.5,2.1.5,2.1.5,3.3.10,3.3.10
FFTW.MPI 3.3.10
FFmpeg 4.3.2,5.1.2
FLAC 1.4.2
FlexiBLAS 3.2.1,3.2.1
FreeImage 3.18.0
FreeSurfer 7.4.1
FriBidi 1.0.12
GCC 10.2.0,12.2.0
GCCcore 10.2.0,12.2.0
GDAL 3.6.2
GDRCopy 2.3
GEOS 3.11.1
GLFW 3.3.8
GLPK 5.0
GLib 2.75.0
GMP 6.2.1
GObject-Introspection 1.74.0
GROMACS 2023.3
GSL 2.6,2.7
GST-libav 1.22.1
GST-plugins-bad 1.22.5
GST-plugins-base 1.22.1
GST-plugins-good 1.22.1
GStreamer 1.22.1
GTK3 3.24.35
GTK4 4.11.3
Gaussian 16
Gdk-Pixbuf 2.42.10
Ghostscript 10.0.0
Go 1.17.6,1.21.4
Graphene 1.10.8
HDF 4.2.15
HDF5 1.10.7,1.14.0,1.14.0
HarfBuzz 2.8.2,5.3.1
Highway 1.0.3
ICU 72.1
ImageMagick 7.1.0
Imath 3.1.6
JasPer 2.0.33,4.0.0
Java 11.0.16
JsonCpp 1.9.5
Julia 1.9.3
LAME 3.100
LAMMPS 23Jun2022
LERC 4.0.0
LLVM 15.0.5
LibTIFF 4.4.0
LittleCMS 2.14
M4 1.4.18,1.4.19,1.4.19
MATLAB 2023a,2023b
MPC 1.3.1
MPFR 4.2.0
Mako 1.2.4
Mesa 22.2.4
Meson 0.64.0
NASM 2.15.05
NCCL 2.16.2
NLopt 2.7.1
NSPR 4.35
NSS 3.85
NVHPC 23.1
Ninja 1.11.1
OpenBLAS 0.3.21,0.3.21
OpenCV 4.5.5,4.8.0
OpenEXR 3.1.5
OpenJPEG 2.5.0
OpenMPI 4.0.5,4.1.4,4.1.4
OpenSSL 1.1
OpenSlide 3.4.1
PCRE 8.45
PCRE2 10.40
PLUMED 2.9.0
PROJ 9.1.1
Pango 1.50.12
Perl 5.32.0,5.32.0,5.36.0
Pillow 9.4.0
Pillow-SIMD 9.5.0
PostgreSQL 15.2
PyCairo 1.24.0
PyGObject 3.44.1
PyTorch 2.0.1,2.0.1,2.1.2,2.1.2,2.3.0a0
PyYAML 6.0
Python 2.7.18,3.10.8,3.10.8
Qhull 2020.2
Qt5 5.15.7
Qt5Webkit 5.212.0
QuantumESPRESSO 7.2
R 4.3.0,4.4.1
R-bundle-Bioconductor 3.19
R-bundle-CRAN 2024.06
RE2 2023
RapidJSON 1.1.0
Ruby 3.0.4,3.0.5,3.2.2
Rust 1.65.0
SDL2 2.26.3
SQLite 3.39.4
ScaFaCoS 1.0.4
ScaLAPACK 2.2.0
SciPy-bundle 2023.02
Szip 2.1.1,2.1.1
Tcl 8.6.12
TensorFlow 2.13.0
Tk 8.6.12
Tkinter 3.10.8
UCC 1.1.0
UCC-CUDA 1.1.0
UCX 1.9.0,1.13.1
UCX-CUDA 1.13.1,1.13.1,1.13.1
UDUNITS 2.2.28
UnZip 6.0
VTK 9.2.6
Voro++ 0.4.6
Wayland 1.22.0
X11 20221110
XZ 5.2.5,5.2.7
Xerces-C++ 3.2.3,3.2.4
Xvfb 21.1.6
Yasm 1.3.0
Z3 4.12.2,4.12.2
Zip 3.0
aiohttp 3.8.5
ant 1.10.12
archspec 0.2.0
arpack-ng 3.8.0
arrow-R 16.1.0
assimp 5.2.5
at-spi2-atk 2.38.0
at-spi2-core 2.46.0
awscli 2.13.20
binutils 2.35,2.35,2.39,2.39
bzip2 1.0.8,1.0.8
cURL 7.72.0,7.86.0
cairo 1.17.4
cppy 1.2.1
cuDNN 8.8.0.121,8.9.2.26,8.9.2.26,8.9.2.26
dSQ 1.05
dill 0.3.7
double-conversion 3.2.1
elfutils 0.189
expat 2.2.9,2.4.9
expecttest 0.1.3
ffnvcodec 11.1.5.2
flatbuffers 23.1.4
flatbuffers-python 23.1.4
flex 2.6.4,2.6.4,2.6.4
fontconfig 2.14.1
foss 2022b
freetype 2.12.1
gettext 0.21,0.21.1,0.21.1
gfbf 2022b
giflib 5.2.1
git 2.38.1
git-lfs 3.2.0
glew 2.2.0
gmpy2 2.1.5
gompi 2020b,2022b
googletest 1.12.1
gperf 3.1
gpu_burn 20231110
graphite2 1.3.14
groff 1.22.4,1.22.4
gzip 1.12
h5py 3.8.0
help2man 1.47.16,1.49.2
hwloc 2.2.0,2.8.0
hypothesis 6.68.2
iimpi 2022b
imkl 2022.2.1
imkl-FFTW 2022.2.1
impi 2021.7.1
intel 2022b
intel-compilers 2022.2.1
intltool 0.51.0
iomkl 2022b
jbigkit 2.1
json-c 0.16
kim-api 2.3.0
kineto 0.4.0
libGLU 9.0.2
libarchive 3.4.3,3.6.1
libdeflate 1.15
libdrm 2.4.114
libepoxy 1.5.10
libevent 2.1.12
libfabric 1.11.0,1.16.1
libffi 3.4.4
libgeotiff 1.7.1
libgit2 1.5.0
libglvnd 1.6.0
libiconv 1.17
libjpeg-turbo 2.1.4
libogg 1.3.5
libopus 1.3.1
libpciaccess 0.16,0.17
libpng 1.6.38
libreadline 8.0,8.2
libsndfile 1.2.0
libtirpc 1.3.3
libtool 2.4.6,2.4.7
libunwind 1.6.2
libvorbis 1.3.7
libwebp 1.3.1
libxc 6.1.0
libxml2 2.9.10,2.10.3
libxslt 1.1.37
libyaml 0.2.5
lz4 1.9.4
magma 2.7.2,2.7.2
make 4.3
makeinfo 6.7
matlab-proxy 0.14.0,0.15.1
matplotlib 3.7.0
miniconda 23.5.2,24.3.0
mpi4py 3.1.4
ncurses 6.2,6.2,6.3,6.3
netCDF 4.9.0
nettle 3.8.1
networkx 2.8.8,3.0
nlohmann_json 3.11.2
nodejs 14.21.3,18.12.1,20.11.1
nsync 1.26.0
numactl 2.0.13,2.0.16
openslide-python 1.3.1
patchelf 0.17.2
pigz 2.7
pixman 0.42.2
pkg-config 0.29.2,0.29.2
pkgconf 1.8.0,1.9.3
pkgconfig 1.5.5
protobuf 3.19.4,23.0
protobuf-python 3.19.4,4.23.0
pybind11 2.10.3
pytest-flakefinder 1.1.0
pytest-rerunfailures 12.0
pytest-shard 0.1.2
re2c 3.0
ruamel.yaml 0.17.21
scikit-build 0.17.2
snappy 1.1.9
sympy 1.12
tbb 2021.10.0
torchvision 0.15.2,0.15.2,0.16.2,0.16.2,0.18.0a0
utf8proc 2.8.0
util-linux 2.38.1
x264 20230226
x265 3.5
xorg-macros 1.19.2,1.19.3
xxd 9.0.1696
zlib 1.2.11,1.2.11,1.2.12,1.2.12
zstd 1.5.2

Find Modules

All Available Modules

To list all available modules, run:

module avail

Search For Modules

You can search for modules or extensions with spider and avail. For example, to find and list all Python version 3 modules, run:

module avail python/3

To find any module or extension that mentions python in its name or description, use the command:

module spider python

Get Module Help

You can get a brief description of a module and the url to the software's homepage by running:

module help modulename/version

If you don't find a commonly used software package you require, contact us with a software installation request. Otherwise, check out our installation guides to install it for yourself.

Load and Unload Modules

Load

The module load command modifies your environment so you can use the specified software package(s).

  • This command is case-sensitive to module names.
  • The module load command will load dependencies as needed, you don't need to load them separately.
  • For batch jobs, add module load command(s) to your submission script.

For example, to load Python version 3.8.6 and BLAST+ version 2.11.0, find modules with matching toolchain suffixes and run the command:

module load Python/3.8.6-GCCcore-10.2.0 BLAST+/2.11.0-GCCcore-10.2.0

Lmod will add python and the BLAST commands to your environment. Since both of these modules were built with the GCCcore/10.2.0 toolchain module, they will not load conflicting libraries. Recall you can see the other modules that were loaded by running module list.

Module Defaults

As new versions of software get installed and others are deprecated, the default module version can change over time. It is best practice to note the specific module versions you are using for a project and load those explicitly, e.g. module load Python/3.8.6-GCCcore-10.2.0 not module load Python. This makes your work more reproducible and less likely to change unexpectedly in the future.

Unload

You can also unload a specific module that you've previously loaded:

module unload R

Or unload all modules at once with:

module reset

Purge Lightly

We used to recommend module purge instead of module reset for module unloading. However, module purge is slower and also prints a deceptive warning about a 'sticky' module called StdEnv that these commands leave loaded. Avoid unloading StdEnv unless explicitly told to do so, otherwise you will lose some important setup for the cluster you are on.

Module Collections

Save Collections

It can be a pain to enter a long list of modules every time you return to a project. Module collections allow you to create sets of modules to load together. This method is particularly useful if you have two or more module sets that may conflict with one another.

Save a collection of modules by first loading all the modules you want to save together then run:

module save environment_name

(replace environment_name with something more meaningful to you)

Restore Collections

Load a collection with module restore:

module restore environment_name

To modify a collection: restore it, make the desired changes by loading and/or unloading modules, then save it to the same name.

List Collections

To get a list of your collections, run:

module savelist

ml: A Convinient Tool

Lmod provides a convinient tool called ml to simplify all of the module commands.

List Module Loaded

ml

Load Modules

ml Python/3.8.6-GCCcore-10.2.0

Unload Modules

ml -Python

With moudle Sub-commands

ml can be used to replace the module command. It can take all the sub-commands from module and works the same way as module does.

ml load Python R   
ml unload Python
ml spider Python
ml avail
ml whatis Python
ml key Python
ml purge
ml save test
ml restore test

Environment Variables

To refer to the directory where the software from a module is stored, you can use the environment variable $EBROOTMODULENAME where MODULENAME is the name of the module in all caps with no spaces. This can be useful for finding the executables, libraries, or readme files that are included with the software:

[netid@node ~ ]$ module load SAMtools
[netid@node ~ ]$ echo $EBVERSIONSAMTOOLS
1.11
[netid@node ~ ]$ ls $EBROOTSAMTOOLS
bin  easybuild  include  lib  lib64  share
[netid@node ~ ]$ ls $EBROOTSAMTOOLS/bin
ace2sam             maq2sam-short       psl2sam.pl             soap2sam.pl
blast2sam.pl        md5fa               r2plot.lua             vcfutils.lua
bowtie2sam.pl       md5sum-lite         sam2vcf.pl             wgsim
export2sam.pl       novo2sam.pl         samtools               wgsim_eval.pl
interpolate_sam.pl  plot-ampliconstats  samtools.pl            zoom2sam.pl
maq2sam-long        plot-bamstats       seq_cache_populate.pl

Further Reading

You can view documentation while on the cluster using the command:

man module

There is even more information at the official Lmod website and related documentation.


Last update: February 17, 2025