Load Software with Modules
To facilitate the diverse work that happens on the YCRC clusters we compile, install, and manage software packages separately from those installed in standard system directories. We use EasyBuild to build, install, and manage packages. You can access these packages as Lmod modules. The modules involving compiled software are arranged into hierarchical toolchains that make dependencies more consistent when you load multiple modules.
Warning
Avoid loading Python or R modules simultaneously with conda environments. This will almost always break something.
Installed Software Modules
Available Software Modules (click to expand)
| Package | Versions |
|---|---|
| APR | 1.7.5 |
| APR-util | 1.6.3 |
| ATK | 2.38.0 |
| Armadillo | 11.4.3 |
| Autoconf | 2.71,2.72 |
| Automake | 1.16.5,1.16.5 |
| Autotools | 20220317,20231222 |
| AxiSEM3D | 2024Oct16 |
| BLIS | 0.9.0 |
| BeautifulSoup | 4.11.1 |
| Bison | 3.8.2,3.8.2,3.8.2 |
| Boost | 1.81.0,1.81.0 |
| Brotli | 1.0.9 |
| Brunsli | 0.1 |
| CESM | 2.1.3,2.1.3 |
| CESM-deps | 2,2 |
| CFITSIO | 4.2.0 |
| CMake | 3.24.3 |
| CP2K | 2023.1 |
| CUDA | 12.1.1 |
| Check | 0.15.2 |
| DB | 18.1.40 |
| DBus | 1.15.2 |
| Doxygen | 1.9.5 |
| ELPA | 2022.05.001 |
| ESMF | 8.3.0,8.3.0 |
| EasyBuild | 4.9.3,4.9.4 |
| Eigen | 3.4.0 |
| FFTW | 2.1.5,2.1.5,3.3.10,3.3.10 |
| FFTW.MPI | 3.3.10 |
| FFmpeg | 5.1.2 |
| FHI-aims | 231212_1 |
| FLAC | 1.4.2 |
| FlexiBLAS | 3.2.1 |
| FriBidi | 1.0.12 |
| GCC | 12.2.0 |
| GCCcore | 12.2.0,13.3.0 |
| GDAL | 3.6.2 |
| GDRCopy | 2.3.1 |
| GEOS | 3.11.1 |
| GLPK | 5.0 |
| GLib | 2.75.0 |
| GMP | 6.2.1 |
| GObject-Introspection | 1.74.0 |
| GROMACS | 2023.3 |
| GSL | 2.7 |
| GTK3 | 3.24.35 |
| Gdk-Pixbuf | 2.42.10 |
| Ghostscript | 10.0.0 |
| HDF | 4.2.15 |
| HDF5 | 1.14.0,1.14.0,1.14.0 |
| HPCG | 3.1 |
| HPL | 2.3 |
| HarfBuzz | 5.3.1 |
| Highway | 1.0.3 |
| ICU | 72.1 |
| IOR | 4.0.0,4.0.0 |
| IPython | 8.14.0 |
| ImageMagick | 7.1.0 |
| Imath | 3.1.6 |
| JasPer | 4.0.0 |
| Java | 11.0.16 |
| Julia | 1.10.4 |
| JupyterLab | 4.0.3 |
| JupyterNotebook | 7.0.3 |
| LAME | 3.100 |
| LAMMPS | 2Aug2023 |
| LERC | 4.0.0 |
| LLVM | 15.0.5 |
| LibTIFF | 4.4.0 |
| Libint | 2.7.2 |
| LittleCMS | 2.14 |
| M4 | 1.4.19,1.4.19,1.4.19 |
| MATLAB | 2023b |
| MDI | 1.4.16 |
| METIS | 5.1.0 |
| MPFR | 4.2.0 |
| Mako | 1.2.4 |
| Mesa | 22.2.4 |
| Meson | 0.64.0 |
| NASM | 2.15.05 |
| NLopt | 2.7.1 |
| Ninja | 1.11.1 |
| OSU-Micro-Benchmarks | 6.2 |
| OpenBLAS | 0.3.21 |
| OpenEXR | 3.1.5 |
| OpenJPEG | 2.5.0 |
| OpenMPI | 4.1.4,4.1.4 |
| OpenPGM | 5.2.122 |
| OpenSSL | 1.1 |
| PBZIP2 | 1.1.13 |
| PCRE | 8.45 |
| PCRE2 | 10.40 |
| PLUMED | 2.9.2 |
| PROJ | 9.1.1 |
| Pango | 1.50.12 |
| Perl | 5.36.0,5.38.2 |
| PnetCDF | 1.13.0,1.13.0 |
| PostgreSQL | 15.2 |
| PyYAML | 6.0 |
| Python | 3.10.8,3.10.8 |
| Qhull | 2020.2 |
| QuantumESPRESSO | 7.2 |
| R | 4.4.1 |
| R-bundle-CRAN | 2024.06 |
| Rust | 1.65.0 |
| SCons | 4.5.2 |
| SDL2 | 2.26.3 |
| SQLite | 3.39.4 |
| SWIG | 4.1.1 |
| ScaFaCoS | 1.0.4 |
| ScaLAPACK | 2.2.0 |
| SciPy-bundle | 2023.02 |
| Serf | 1.3.9 |
| Subversion | 1.14.3 |
| Szip | 2.1.1 |
| Tcl | 8.6.12 |
| Tk | 8.6.12 |
| TotalView | 2023.3.10 |
| UCC | 1.1.0 |
| UCX | 1.13.1,1.16.0 |
| UCX-CUDA | 1.13.1 |
| UDUNITS | 2.2.28 |
| UnZip | 6.0 |
| VASP | 6.4.2 |
| VTK | 9.2.6 |
| Voro++ | 0.4.6 |
| Wannier90 | 3.1.0 |
| X11 | 20221110 |
| XML-LibXML | 2.0208 |
| XZ | 5.2.7 |
| Xerces-C++ | 3.2.4 |
| Xvfb | 21.1.6 |
| Yasm | 1.3.0 |
| ZeroMQ | 4.3.4 |
| archspec | 0.2.0 |
| arpack-ng | 3.8.0 |
| at-spi2-atk | 2.38.0 |
| at-spi2-core | 2.46.0 |
| awscli | 2.17.51 |
| binutils | 2.39,2.39,2.42,2.42 |
| bzip2 | 1.0.8 |
| cURL | 7.86.0 |
| cairo | 1.17.4 |
| elbencho | 2.0,3.0 |
| expat | 2.4.9 |
| ffnvcodec | 11.1.5.2 |
| fio | 3.34 |
| flex | 2.6.4,2.6.4,2.6.4 |
| fontconfig | 2.14.1 |
| foss | 2022b |
| freetype | 2.12.1 |
| gettext | 0.21.1,0.21.1 |
| gfbf | 2022b |
| giflib | 5.2.1 |
| git | 2.38.1 |
| gompi | 2022b |
| googletest | 1.12.1 |
| gperf | 3.1 |
| groff | 1.22.4 |
| gzip | 1.12 |
| h5py | 3.8.0 |
| help2man | 1.49.2,1.49.3 |
| hwloc | 2.8.0 |
| hypothesis | 6.68.2 |
| iimpi | 2022b,2024a |
| imkl | 2022.2.1,2024.2.0 |
| imkl-FFTW | 2022.2.1,2024.2.0 |
| impi | 2021.7.1,2021.13.0 |
| intel | 2022b,2024a |
| intel-compilers | 2022.2.1,2024.2.0 |
| intltool | 0.51.0 |
| iomkl | 2022b |
| iompi | 2022b |
| jbigkit | 2.1 |
| json-c | 0.16 |
| jupyter-server | 2.7.0 |
| kim-api | 2.3.0 |
| lftp | 4.9.2 |
| libGLU | |
| libaio | |
| libarchive | |
| libdeflate | |
| libdrm | |
| libepoxy | |
| libfabric | |
| libffi | |
| libgeotiff | |
| libgit2 | |
| libglvnd | |
| libiconv | |
| libjpeg-turbo | |
| libogg | |
| libopus | |
| libpciaccess | |
| libpng | |
| libreadline | |
| libsndfile | |
| libsodium | |
| libtirpc | |
| libtool | |
| libunwind | |
| libvorbis | |
| libvori | |
| libxc | |
| libxml2 | |
| libxslt | |
| libxsmm | |
| libyaml | |
| lxml | 4.9.2 |
| lz4 | 1.9.4 |
| make | 4.3 |
| maturin | 1.1.0 |
| miniconda | 24.7.1 |
| mpi4py | 3.1.4 |
| ncurses | 6.3,6.3 |
| netCDF | 4.9.0,4.9.0,4.9.0 |
| netCDF-C++4 | 4.3.1,4.3.1 |
| netCDF-Fortran | 4.6.0,4.6.0 |
| nettle | 3.8.1 |
| networkx | 3.0 |
| nlohmann_json | 3.11.2 |
| nodejs | 18.12.1,20.11.1 |
| numactl | 2.0.16,2.0.18 |
| patchelf | 0.17.2 |
| pigz | 2.7 |
| pixman | 0.42.2 |
| pkg-config | 0.29.2 |
| pkgconf | 1.8.0,1.9.3,2.2.0 |
| pkgconfig | 1.5.5 |
| pybind11 | 2.10.3 |
| ruamel.yaml | 0.17.21 |
| scikit-build | 0.17.2 |
| tbb | 2021.10.0 |
| utf8proc | 2.8.0 |
| util-linux | 2.38.1 |
| x264 | 20230226 |
| x265 | 3.5 |
| xorg-macros | 1.19.3 |
| xxd | 9.0.1696 |
| zlib | 1.2.12,1.2.12,1.3.1,1.3.1 |
| zstd | 1.5.2 |
| Package | Versions |
|---|---|
| ACTC | 1.1,1.1 |
| ADMIXTURE | 1.3.0 |
| AFNI | 23.2.08,2022.1.14,2023.1.01,2023.1.07,24.1.22 |
| ANTLR | 2.7.7 |
| ANTs | 2.3.5 |
| APBS | 1.4.2.1,3.4.1.Linux |
| APR | 1.7.0,1.7.5 |
| APR-util | 1.6.1,1.6.3 |
| ASE | 3.22.1 |
| ATK | 2.36.0,2.38.0 |
| AUGUSTUS | 3.4.0 |
| Abseil | 20230125.2 |
| AdapterRemoval | 2.3.2 |
| AlphaFold | 2.2.3,2.2.3,2.2.4,2.2.4,2.3.2,2.3.2,3.0.0 |
| AmberTools | 23.6 |
| Archive-Zip | 1.68,1.68 |
| AreTomo | 1.3.4 |
| AreTomo2 | 1.0.0 |
| AreTomo3 | 2.0.6beta |
| Armadillo | 10.2.1,11.4.3,11.4.3 |
| Arrow | 0.17.1,0.17.1,6.0.0,11.0.0,14.0.1,16.1.0 |
| Aspera-CLI | 3.9.6.1467.159c5b1 |
| Aspera-Connect | 4.2.4.265 |
| AuthentiCT | 1.0.1 |
| Autoconf | 2.69,2.71,2.72 |
| Automake | 1.16.2,1.16.5,1.16.5 |
| Autotools | 20200321,20220317,20231222 |
| BBMap | 38.90 |
| BCFtools | 1.11,1.16,1.21 |
| BEDOPS | 2.4.41 |
| BEDTools | 2.30.0 |
| BGEN-enkre | 1.1.7 |
| BLAST | 2.2.26 |
| BLAST+ | 2.13.0,2.14.1,2.15.0 |
| BLAT | 3.5,3.5 |
| BLIS | 0.9.0,1.0 |
| BLT | 20220626 |
| BWA | 0.7.17,0.7.17,0.7.17 |
| BamTools | 2.5.1,2.5.1,2.5.2 |
| BaseSpaceCLI | 1.5.3 |
| Bazel | 3.7.2,5.4.1,6.1.0,6.3.1 |
| Beast | 2.6.3,2.6.3,2.6.7,2.7.4,2.7.6 |
| BeautifulSoup | 4.11.1 |
| Bio-DB-BigFile | 1.07,1.07 |
| Bio-DB-HTS | 3.01,3.01 |
| BioPP | 2.4.1 |
| BioPerl | 1.7.8,1.7.8 |
| Biopython | 1.78,1.79,1.81,1.83 |
| Bismark | 0.24.0 |
| Bison | 3.0.4,3.0.4,3.0.5,3.7.1,3.7.1,3.8.2,3.8.2,3.8.2 |
| Blender | 4.0.1,4.2.1 |
| Block | 1.5.3 |
| Blosc | 1.21.0,1.21.3 |
| Blosc2 | 2.8.0 |
| Boost | 1.74.0,1.74.0,1.74.0,1.74.0,1.74.0,1.81.0,1.81.0,1.81.0,1.83.0,1.85.0,1.86.0 |
| Boost.MPI | 1.81.0,1.81.0 |
| Boost.Python | 1.74.0,1.81.0 |
| Boost.Python-NumPy | 1.74.0,1.81.0 |
| Bowtie | 1.3.0,1.3.0,1.3.1 |
| Bowtie2 | 2.3.4.3,2.4.2,2.4.2,2.5.1 |
| Brotli | 1.0.9,1.0.9 |
| Brunsli | 0.1 |
| Bsoft | 2.1.4 |
| CAMPARI | 4.0 |
| CCP4 | 8.0.011,8.0.015 |
| CD-HIT | 4.8.1 |
| CDO | 2.2.2 |
| CESM | 2.1.3,2.1.3 |
| CESM-deps | 2,2 |
| CFITSIO | 3.48,4.2.0 |
| CGAL | 4.14.3,4.14.3,5.2,5.2.4,5.5.2 |
| CLHEP | 2.4.4.0,2.4.6.4 |
| CMake | 3.18.4,3.18.4,3.20.1,3.24.3,3.29.3 |
| COMSOL | 5.2a,5.2a |
| CONN | 22a |
| CP2K | 8.1 |
| CPPE | 0.3.1 |
| CREST | 3.0.1,3.0.2 |
| CTFFIND | 4.1.14,4.1.14,4.1.14,4.1.14,4.1.14 |
| CUDA | 10.1.243,11.1.1,11.3.1,11.8.0,12.0.0,12.1.1,12.6.0 |
| CUDAcore | 11.1.1,11.3.1 |
| CUnit | 2.1 |
| Cartopy | 0.20.3,0.22.0 |
| Catch2 | 2.13.10 |
| Cbc | 2.10.5 |
| CellRanger | 3.0.2,6.1.2,7.0.0,7.0.1,7.1.0,7.2.0,8.0.1 |
| CellRanger-ARC | 2.0.2 |
| Cereal | 1.3.2,1.3.2 |
| Cgl | 0.60.7 |
| CharLS | 2.2.0,2.4.2 |
| CheMPS2 | 1.8.12 |
| Check | 0.15.2,0.15.2 |
| Chimera | 1.16 |
| ChimeraX | 1.6.1,1.7,1.8 |
| Clang | 11.0.1,13.0.1,15.0.5,16.0.4,16.0.4 |
| Clp | 1.17.8 |
| Code-Server | 4.7.0,4.7.0,4.16.1,4.17.0 |
| CoinUtils | 2.11.9 |
| Compress-Raw-Zlib | 2.202,2.202 |
| CoordgenLibs | 3.0.2 |
| Coot | 0.9.7,0.9.8.6 |
| CppUnit | 1.15.1 |
| Cufflinks | 20190706 |
| Cython | 0.29.22,3.0.8,3.0.10 |
| Cytoscape | 3.9.1 |
| DB | 18.1.40,18.1.40 |
| DBD-mysql | 4.050,4.050 |
| DB_File | 1.855 |
| DBus | 1.13.18,1.15.2 |
| DIAMOND | 2.0.15,2.1.7 |
| DMTCP | 3.0.0,3.0.0 |
| DSSP | 4.2.1,4.4.7 |
| Dice | 20240101 |
| Doxygen | 1.8.20,1.9.5 |
| EDirect | 20.4.20230912,20.5.20231006,22.8.20241011 |
| EIGENSOFT | 7.2.1 |
| ELPA | 2020.11.001,2020.11.001,2021.11.001,2022.05.001 |
| EMAN | 1.9 |
| EMAN2 | 2.91,2.99.47 |
| EMBOSS | 6.6.0 |
| ESM-2 | 2.0.0 |
| ESMF | 8.3.0,8.3.0 |
| EasyBuild | 4.6.2,4.7.0,4.7.1,4.7.2,4.8.0,4.8.1,4.8.2,4.9.0,4.9.1,4.9.2,4.9.3 |
| Eigen | 3.3.8,3.3.9,3.4.0,3.4.0,3.4.0 |
| El-MAVEN | 0.12.1beta |
| Emacs | 28.1,28.2 |
| ExifTool | 12.58,12.70 |
| Exodus | 20240403,20240403 |
| FASTX-Toolkit | 0.0.14 |
| FFTW | 2.1.5,2.1.5,2.1.5,2.1.5,3.3.8,3.3.8,3.3.8,3.3.8,3.3.8,3.3.10,3.3.10,3.3.10,3.3.10,3.3.10 |
| FFTW.MPI | 3.3.10,3.3.10,3.3.10 |
| FFmpeg | 4.3.1,5.1.2 |
| FHI-aims | 231212_1 |
| FLAC | 1.3.3,1.4.2 |
| FLASH | 2.2.00 |
| FLTK | 1.3.5,1.3.8 |
| FRE-NCtools | 2024.05 |
| FSL | 6.0.5.2,6.0.5.2,6.0.7.9 |
| FTGL | 2.3,2.4.0 |
| Faiss | 1.7.4 |
| FastME | 2.1.6.3 |
| FastQC | 0.11.9,0.12.1 |
| FastUniq | 1.1 |
| Fiji | 2.14.0,20221201,20230801 |
| Fiona | 1.9.2 |
| Flask | 2.2.3 |
| FlexiBLAS | 3.2.1,3.2.1,3.4.4 |
| FragGeneScan | 1.31 |
| FreeImage | 3.18.0,3.18.0 |
| FreeSurfer | dev,dev,7.3.2,7.4.1 |
| FreeXL | 2.0.0 |
| FriBidi | 1.0.10,1.0.12 |
| GATK | 3.8,4.2.0.0,4.2.6.1,4.4.0.0,4.5.0.0,4.6.0.0 |
| GCC | 10.2.0,12.2.0,13.3.0 |
| GCCcore | 7.3.0,10.2.0,12.2.0,13.3.0 |
| GCTA | 1.94.1 |
| GConf | 3.2.6 |
| GDAL | 3.2.1,3.6.2 |
| GDB | 10.1,13.2 |
| GDCM | 3.0.21 |
| GDRCopy | 2.1,2.3,2.3.1,2.4.1 |
| GEOS | 3.9.1,3.11.1 |
| GL2PS | 1.4.2,1.4.2 |
| GLM | 0.9.9.8 |
| GLPK | 4.65,5.0 |
| GLib | 2.66.1,2.75.0 |
| GLibmm | 2.49.7 |
| GMP | 6.2.0,6.2.1 |
| GObject-Introspection | 1.66.1,1.66.1,1.74.0 |
| GRASS | 8.2.0 |
| GROMACS | 2021.5,2023.3 |
| GSEA | 4.3.2 |
| GSL | 2.5,2.6,2.6,2.6,2.7,2.7,2.7 |
| GST-libav | 1.18.4,1.22.1 |
| GST-plugins-bad | 1.22.5 |
| GST-plugins-base | 1.18.4,1.18.4,1.22.1,1.22.1 |
| GST-plugins-good | 1.18.4,1.22.1 |
| GStreamer | 1.18.4,1.18.4,1.22.1,1.22.1 |
| GTK+ | 3.24.23 |
| GTK2 | 2.24.33 |
| GTK3 | 3.24.35 |
| GTK4 | 4.11.3 |
| GTS | 0.7.6 |
| Garfield++ | 5.0 |
| Gaussian | 16,16 |
| Gctf | 1.18,1.18 |
| Gdk-Pixbuf | 2.40.0,2.40.0,2.42.10 |
| Geant4 | 10.7.1 |
| Geant4-data | 11.3 |
| GenomeTools | 1.6.1 |
| Ghostscript | 9.53.3,10.0.0 |
| GitPython | 3.1.31 |
| Globus-CLI | 3.18.0,3.30.1 |
| GnuTLS | 3.7.8 |
| Go | 1.17.6,1.21.1,1.21.4,1.22.1 |
| Grace | 5.1.25 |
| Gradle | 8.6 |
| Graphene | 1.10.8 |
| GraphicsMagick | 1.3.36 |
| Graphviz | 2.47.0 |
| Guile | 2.2.7,3.0.9,3.0.9 |
| Gurobi | 9.1.2,10.0.3 |
| HDF | 4.2.15,4.2.15 |
| HDF5 | 1.10.7,1.10.7,1.10.7,1.10.7,1.14.0,1.14.0,1.14.0,1.14.0 |
| HDFView | 3.3.1 |
| HH-suite | 3.3.0,3.3.0,3.3.0 |
| HISAT-3N | 20221013 |
| HISAT2 | 2.2.1 |
| HMMER | 3.3.2,3.3.2,3.4 |
| HOOMD-blue | 4.9.1,4.9.1 |
| HPCG | 3.1,3.1,3.1,3.1 |
| HPL | 2.3,2.3,2.3,2.3 |
| HTSeq | 0.13.5 |
| HTSlib | 1.11,1.11,1.12,1.16,1.17,1.21 |
| HarfBuzz | 2.6.7,5.3.1 |
| Harminv | 1.4.1,1.4.2 |
| HepMC3 | 3.2.6 |
| Highway | 1.0.3 |
| HyPhy | 2.5.62 |
| Hypre | 2.20.0,2.27.0 |
| ICU | 67.1,72.1,75.1 |
| IDBA-UD | 1.1.3 |
| IGV | 2.16.0,2.16.2,2.17.4,2.19.1 |
| IMOD | 4.11.15,4.11.16,4.11.24_RHEL7,4.11.24,4.12.56_RHEL7,4.12.62_RHEL8 |
| IOR | 4.0.0,4.0.0 |
| IPython | 7.18.1,8.14.0 |
| IQ-TREE | 2.1.2 |
| ISA-L | 2.30.0 |
| ISL | 0.23,0.26 |
| ImageMagick | 7.0.10,7.1.0 |
| Imath | 3.1.6 |
| Infernal | 1.1.4 |
| IsoNet | 0.2.1 |
| JAGS | 4.3.0,4.3.2 |
| Jansson | 2.14 |
| JasPer | 2.0.24,4.0.0 |
| Java | 1.8.345,8.345,11.0.16,17.0.4,21.0.2 |
| JsonCpp | 1.9.4,1.9.5 |
| Judy | 1.0.5,1.0.5 |
| Julia | 1.8.2,1.8.5,1.9.2,1.10.0,1.10.2,1.10.4,1.11.1 |
| Jupyter-bundle | 20230823 |
| JupyterHub | 4.0.1 |
| JupyterLab | 2.2.8,4.0.3 |
| JupyterNotebook | 7.0.3 |
| KaHIP | 3.14 |
| Kalign | 3.3.1,3.4.0 |
| Kent_tools | 411,461 |
| Knitro | 12.0.0,14.0.0 |
| Kraken2 | 2.1.3 |
| LAME | 3.100,3.100 |
| LAMMPS | 2Aug2023,23Jun2022 |
| LDC | 0.17.6,1.25.1 |
| LERC | 4.0.0 |
| LHAPDF | 6.5.4 |
| LLVM | 11.0.0,14.0.6,15.0.5,16.0.4 |
| LMDB | 0.9.24,0.9.29 |
| LSD2 | 2.2 |
| LZO | 2.10,2.10 |
| Leptonica | 1.83.0 |
| LibSoup | 3.0.8 |
| LibTIFF | 4.1.0,4.2.0,4.4.0 |
| Libint | 2.6.0 |
| LittleCMS | 2.11,2.14 |
| Lua | 5.4.2,5.4.4 |
| M4 | 1.4.17,1.4.18,1.4.18,1.4.18,1.4.19,1.4.19,1.4.19 |
| MACS2 | 2.2.7.1,2.2.9.1,2.2.9.1 |
| MACS3 | 3.0.1 |
| MAFFT | 7.475,7.505 |
| MAGeCK | 0.5.9.5 |
| MATIO | 1.5.23 |
| MATLAB | 2018b,2020b,2022a,2022b,2023a,2023b |
| MCL | 14.137 |
| MCR | R2019b.8,R2020b.5,R2021b.6,R2022a.6,R2023a |
| MDI | 1.4.16 |
| MEME | 5.4.1 |
| METIS | 5.1.0,5.1.0,5.1.0 |
| MINC | 2.4.06 |
| MMseqs2 | 13,14 |
| MPB | 1.11.1 |
| MPC | 1.2.1,1.3.1 |
| MPFR | 4.1.0,4.2.0 |
| MPICH | 4.2.1 |
| MRIcron | 1.0.20190902 |
| MRtrix3 | 3.0.2 |
| MUMPS | 5.3.5,5.6.1 |
| MUMmer | 4.0.0rc1 |
| MUSCLE | 5.1 |
| MadGraph5_aMC | 2.9.16 |
| MafFilter | 1.3.1 |
| Mako | 1.1.3,1.2.4 |
| MariaDB | 10.5.8,10.11.2 |
| Markdown | 3.6 |
| Mathematica | 13.0.1 |
| Maven | 3.9.2 |
| MaxBin | 2.2.7 |
| MaxQuant | 2.4.2.0,2.4.2.0,2.6.1.0 |
| Meep | 1.24.0,1.26.0 |
| Mercurial | 5.7.1 |
| Mesa | 20.2.1,21.3.3,22.2.4 |
| MeshLab | 2023.12 |
| Meson | 0.55.3,0.62.1,0.64.0,1.3.1,1.4.0 |
| Metal | 2020 |
| MitoGraph | 3.0 |
| Mono | 6.8.0.105,6.8.0.123 |
| MotionCor2 | 1.5.0,1.6.4 |
| MotionCor3 | 1.0.1 |
| MrBayes | 3.2.6,3.2.7 |
| MultiQC | 1.10.1 |
| NAG | 29 |
| NAMD | 2.14,2.14,2.14,2.14 |
| NASM | 2.15.05,2.15.05 |
| NBO | 7.0 |
| NCCL | 2.8.3,2.8.4,2.10.3,2.16.2,2.16.2,2.16.2,2.18.3,2.23.4 |
| NCO | 5.2.1,5.2.1 |
| NECI | 20230620 |
| NEdit | 5.7 |
| NGS | 2.10.9 |
| NIfTI | 2.0.0 |
| NLopt | 2.6.2,2.6.2,2.7.0,2.7.1 |
| NSPR | 4.29,4.35 |
| NSS | 3.57,3.85 |
| NVHPC | 21.11,21.11,23.1,24.9 |
| Net-core | 3.1.101 |
| NetLogo | 6.4.0 |
| Netpbm | 10.86.41 |
| Nextflow | 22.10.6,23.04.2,23.10.1,24.04.2,24.04.4 |
| Ninja | 1.10.1,1.11.1,1.12.1 |
| ORCA | 5.0.3,5.0.3,5.0.4,5.0.4,6.0.0,6.0.1 |
| OSU-Micro-Benchmarks | 5.7,5.7,6.2,6.2 |
| OligoArray | 2.1 |
| OligoArrayAux | 3.8 |
| OpenBLAS | 0.3.12,0.3.21,0.3.21,0.3.27 |
| OpenBabel | 3.1.1 |
| OpenCV | 4.5.1,4.8.0 |
| OpenEXR | 2.5.5,3.1.5 |
| OpenFOAM | v2012,v2206,v2212 |
| OpenJPEG | 2.4.0,2.5.0 |
| OpenLibm | 0.7.5 |
| OpenMM | 7.5.0,7.5.1,7.5.1,7.5.1,7.7.0,8.0.0 |
| OpenMPI | 4.0.5,4.0.5,4.0.5,4.0.5,4.0.5,4.1.4,4.1.4,4.1.4 |
| OpenPGM | 5.2.122,5.2.122 |
| OpenSSL | 1.0,1.1,3 |
| OpenSlide | 3.4.1 |
| OpenSlide-Java | 0.12.4 |
| OrthoFinder | 2.5.4 |
| Osi | 0.108.8 |
| PALEOMIX | 1.3.8 |
| PAML | 4.10.7 |
| PBZIP2 | 1.1.13 |
| PCRE | 8.44,8.45 |
| PCRE2 | 10.35,10.40 |
| PDBFixer | 1.7 |
| PEAR | 0.9.11 |
| PEET | 1.15.0,1.16.0a |
| PETSc | 3.15.0,3.17.4,3.20.3 |
| PGI | 18.10,18.10 |
| PIPseeker | 2.1.4 |
| PKTOOLS | 2.6.7.6,2.6.7.6 |
| PLINK | 1.9b_6.21,2_avx2_20221024 |
| PLUMED | 2.6.2,2.7.0,2.7.3,2.9.0,2.9.2 |
| PMIx | 5.0.2 |
| POV-Ray | 3.7.0.8,3.7.0.10 |
| PRINSEQ | 0.20.4 |
| PROJ | 7.2.1,9.1.1 |
| PRRTE | 3.0.5 |
| PYTHIA | 8.309 |
| Pandoc | 2.13,3.1.2 |
| Pango | 1.47.0,1.50.12 |
| ParMETIS | 4.0.3 |
| ParaView | 5.8.1,5.11.0 |
| PartitionFinder | 2.1.1 |
| Perl | 5.28.0,5.32.0,5.32.0,5.32.1,5.36.0,5.36.0,5.36.1,5.38.0,5.38.2 |
| Perl-bundle-CPAN | 5.36.1 |
| Phenix | 1.20.1,1.20.1 |
| PhyloBayes | 4.1e |
| Pillow | 8.0.1,9.4.0 |
| Pillow-SIMD | 7.1.2,9.5.0 |
| Pint | 0.22 |
| PnetCDF | 1.12.2,1.12.3,1.13.0,1.13.0 |
| PostgreSQL | 13.2,15.2 |
| PuLP | 2.7.0 |
| PyBLP | 1.1.0 |
| PyBerny | 0.6.3 |
| PyCairo | 1.24.0 |
| PyCharm | 2022.3.2,2024.3.2 |
| PyCheMPS2 | 1.8.12 |
| PyGObject | 3.44.1 |
| PyInstaller | 6.3.0 |
| PyOpenGL | 3.1.5,3.1.6 |
| PyQt5 | 5.15.4,5.15.7 |
| PySCF | 2.4.0 |
| PyTables | 3.5.2,3.8.0 |
| PyTorch | 1.9.0,1.13.1,2.1.2,2.1.2 |
| PyYAML | 5.3.1,6.0 |
| PycURL | 7.45.2 |
| Pylada-light | 2023Oct13 |
| Pysam | 0.16.0.1,0.16.0.1,0.16.0.1,0.21.0 |
| Python | 2.7.18,2.7.18,3.8.6,3.8.6,3.10.8,3.10.8,3.10.8,3.10.8,3.12.3 |
| Python-bundle-PyPI | 2023.06,2024.06 |
| QCA | 2.3.5 |
| QScintilla | 2.11.6 |
| QTLtools | 1.3.1 |
| Qhull | 2020.2,2020.2 |
| Qt5 | 5.14.2,5.15.7 |
| Qt5Webkit | 5.212.0,5.212.0 |
| QtKeychain | 0.13.2 |
| QtPy | 2.3.0 |
| Qtconsole | 5.4.0 |
| QuPath | 0.5.0,0.5.1 |
| QuantumESPRESSO | 6.8,7.0,7.2 |
| Quip | 1.1.8,1.1.8,20171217 |
| Qwt | 6.1.5,6.2.0 |
| R | 4.2.0,4.2.0,4.3.2,4.3.2,4.4.1,4.4.1 |
| R-INLA | 24.01.18 |
| R-bundle-Bioconductor | 3.15,3.16,3.18,3.19 |
| R-bundle-CRAN | 2023.12,2024.06 |
| RDKit | 2022.09.5 |
| RE2 | 2023 |
| RECON | 1.08 |
| RELION | 3.0.8,3.1.4,3.1.4,3.1.4,4.0.0,4.0.1,4.0.1,5beta,5beta,5.0.0 |
| RELION-composite-masks | 5.0.0 |
| RMBlast | 2.11.0 |
| ROOT | 6.26.06,6.26.10 |
| RSEM | 1.3.3 |
| RStudio | 2022.07.2,2022.12.0,2024.04.2 |
| RStudio-Server | 2024.04.1+748 |
| RapidJSON | 1.1.0,1.1.0 |
| Regenie | 4.0 |
| RepeatMasker | 4.1.2 |
| RepeatScout | 1.0.6 |
| ResMap | 1.95 |
| RevBayes | 1.1.1,1.2.1,1.2.2,1.2.2 |
| Rivet | 3.1.9 |
| Rmath | 4.0.4,4.4.1 |
| Rosetta | 3.12 |
| Ruby | 2.7.2,3.0.5,3.2.2 |
| Rust | 1.52.1,1.65.0,1.70.0,1.75.0,1.78.0 |
| SAMtools | 1.11,1.11,1.16,1.16.1,1.18,1.20,1.21 |
| SAS | 9.4M8,9.4 |
| SBGrid | 2.11.2 |
| SCOTCH | 6.1.0,7.0.3 |
| SCons | 4.0.1,4.5.2 |
| SDL2 | 2.0.14,2.26.3 |
| SHAPEIT | 2.r904.glibcv2.17 |
| SHAPEIT4 | 4.2.2 |
| SLEPc | 3.15.0,3.17.2 |
| SMRT-Link | 11.1.0.166339,12.0.0 |
| SOCI | 4.0.3,4.0.3 |
| SPAGeDi | 1.5d |
| SPAdes | 3.15.1,3.15.5 |
| SPM | 12.5_r7771 |
| SQLite | 3.33.0,3.39.4,3.45.3 |
| SRA-Toolkit | 2.10.9,3.0.10,3.1.1,3.1.1 |
| STAR | 2.7.6a,2.7.7a,2.7.8a,2.7.9a,2.7.11a,2.7.11a |
| STREAM | 5.10 |
| SWIG | 4.0.2,4.1.1 |
| Salmon | 1.4.0 |
| Sambamba | 0.8.0 |
| ScaFaCoS | 1.0.1,1.0.4 |
| ScaLAPACK | 2.1.0,2.1.0,2.2.0,2.2.0,2.2.0 |
| SciPy-bundle | 2020.11,2020.11,2020.11,2020.11,2020.11,2021.05,2023.02,2024.05 |
| Seaborn | 0.12.2,0.13.2 |
| Seq-Gen | 1.3.4 |
| SeqKit | 2.3.1,2.8.1 |
| Serf | 1.3.9,1.3.9 |
| Shapely | 1.8.5.post1,2.0.1 |
| Sherpa | 3.0.0 |
| Slicer | 5.6.2 |
| SpaceRanger | 2.1.1 |
| Spark | 3.1.1,3.1.1,3.5.0,3.5.0,3.5.1,3.5.3,3.5.4 |
| SpectrA | 1.0.0,1.0.1 |
| Stacks | 2.59 |
| Stata | 17 |
| StringTie | 2.1.4 |
| Subread | 2.0.3 |
| Subversion | 1.14.0,1.14.3 |
| SuiteSparse | 5.8.1,5.13.0 |
| Summovie | 1.0.2 |
| SuperLU_DIST | 8.1.2 |
| Szip | 2.1.1,2.1.1 |
| TOMO3D | 01 |
| TOPAS | 3.9 |
| TRF | 4.09.1 |
| TRUST4 | 1.0.7 |
| TWL-NINJA | 0.97 |
| Tcl | 8.6.10,8.6.12,8.6.14 |
| TensorFlow | 2.5.0,2.7.1,2.13.0,2.15.1 |
| TensorRT | 8.6.1 |
| Tk | 8.6.10,8.6.12 |
| Tkinter | 3.8.6,3.10.8 |
| TopHat | 2.1.2,2.1.2 |
| TotalView | 2023.3.10 |
| TreeMix | 1.13 |
| Trilinos | 13.4.1 |
| Trim_Galore | 0.6.7 |
| Trimmomatic | 0.39 |
| UCC | 1.1.0,1.3.0 |
| UCC-CUDA | 1.1.0,1.1.0,1.3.0 |
| UCX | 1.9.0,1.9.0,1.10.0,1.13.1,1.16.0 |
| UCX-CUDA | 1.10.0,1.13.1,1.13.1,1.13.1,1.16.0 |
| UDUNITS | 2.2.26,2.2.28 |
| USEARCH | 11.0.667 |
| UnZip | 6.0,6.0,6.0 |
| Unblur | 1.0.2 |
| VASP | 5.4.1,5.4.4,5.4.4,6.3.0,6.4.2 |
| VASPsol | 5.4.1 |
| VCFtools | 0.1.16 |
| VDJtools | 1.2.1 |
| VEP | 107,110,112,112.0 |
| VESTA | 3.5.8 |
| VMD | 1.9.4a57 |
| VSCode | 1.95.3,1.96.2,1.96.4 |
| VTK | 9.0.1,9.0.1,9.2.6 |
| VTune | 2023.2.0 |
| Valgrind | 3.16.1,3.21.0 |
| ViennaRNA | 2.5.1 |
| Vim | 9.0.1434 |
| VisPy | 0.12.2 |
| Voro++ | 0.4.6,0.4.6 |
| WRF | 4.4.1 |
| Wannier90 | 3.1.0,3.1.0 |
| Wayland | 1.22.0 |
| Waylandpp | 1.0.0 |
| WebKitGTK+ | 2.40.4 |
| X11 | 20201008,20221110 |
| XCFun | 2.1.1 |
| XGBoost | 2.1.1,2.1.1 |
| XML-LibXML | 2.0206,2.0208 |
| XMedCon | 0.25.0 |
| XZ | 5.2.5,5.2.7,5.4.5 |
| Xerces-C++ | 3.1.4,3.2.3,3.2.4 |
| Xvfb | 1.20.9,21.1.6 |
| YODA | 1.9.9 |
| Yasm | 1.3.0,1.3.0 |
| Z3 | 4.8.10,4.10.2,4.12.2,4.12.2 |
| ZeroMQ | 4.3.3,4.3.4 |
| Zip | 3.0,3.0 |
| aiohttp | 3.8.5 |
| alibuild | 1.17.11 |
| angsd | 0.940 |
| anndata | 0.10.5.post1 |
| annovar | 2019Oct24,20200607 |
| ant | 1.10.9,1.10.12,1.10.12 |
| archspec | 0.1.2,0.2.0 |
| aria2 | 1.35.0,1.36.0 |
| arpack-ng | 3.8.0,3.8.0,3.8.0 |
| arrow-R | 6.0.0.2,11.0.0.3,14.0.0.2,16.1.0 |
| at-spi2-atk | 2.38.0,2.38.0 |
| at-spi2-core | 2.38.0,2.46.0 |
| attr | 2.4.48,2.5.1 |
| attrdict3 | 2.0.2 |
| awscli | 2.1.23,2.13.20,2.15.2 |
| bases2Fastq | v1.5.1,v1.5.1,v2.0.0 |
| bcl2fastq2 | 2.20.0,2.20.0 |
| beagle-lib | 3.1.2,3.1.2,3.1.2,3.1.2,4.0.0,4.0.1 |
| binutils | 2.28,2.30,2.30,2.35,2.35,2.39,2.39,2.40,2.42,2.42 |
| biswebnode | 1.3.0 |
| bokeh | 2.2.3,2.2.3,3.2.1 |
| boto3 | 1.20.13,1.26.163 |
| breseq | 0.35.5,0.38.0,0.38.1 |
| bsddb3 | 6.2.9,6.2.9 |
| bzip2 | 1.0.8,1.0.8,1.0.8 |
| c-ares | 1.19.1 |
| cURL | 7.55.1,7.72.0,7.86.0,7.86.0,8.7.1 |
| cairo | 1.16.0,1.16.0,1.17.4 |
| ccache | 4.6.3 |
| cffi | 1.16.0 |
| code-server | 4.91.1,4.95.3 |
| configurable-http-proxy | 4.5.5 |
| cppy | 1.2.1 |
| cromwell | 86 |
| cryptography | 41.0.1,42.0.8 |
| cuDNN | 8.0.5.39,8.2.1.32,8.7.0.84,8.8.0.121,8.9.2.26,9.5.0.50 |
| cuTENSOR | 1.7.0.1,2.0.2.5 |
| cutadapt | 3.4 |
| cxxopts | 3.0.0 |
| cyrus-sasl | 2.1.28 |
| dSQ | 1.05 |
| dask | 2021.2.0,2021.2.0,2023.7.1 |
| dbus-glib | 0.112 |
| dcm2niix | 1.0.20211006,1.0.20230411 |
| dedalus | 3.0.2 |
| deepTools | 3.5.1,3.5.5 |
| deml | 1.1.4 |
| dftd4 | 3.4.0 |
| dill | 0.3.7 |
| dlib | 19.22,19.22,19.22 |
| dorado | 0.5.3 |
| dotNET-Core | 7.0.410 |
| dotNET-SDK | 3.1.300 |
| double-conversion | 3.1.5,3.2.1 |
| dtcmp | 1.1.2,1.1.4 |
| ecBuild | 3.8.0 |
| ecCodes | 2.31.0 |
| einops | 0.7.0 |
| elbencho | 2.0,3.0 |
| elfutils | 0.183,0.189 |
| eman | |
| enchant-2 | 2.3.3 |
| ensmallen | 2.21.1,2.21.1 |
| exiv2 | 0.27.5,0.28.0 |
| expat | 2.2.5,2.2.9,2.4.9,2.6.2 |
| expecttest | 0.1.3 |
| fastjet | 3.4.0 |
| fastjet-contrib | 1.049 |
| fastp | 0.23.2 |
| ffnvcodec | 11.1.5.2 |
| file | 5.39,5.43 |
| flatbuffers | 1.12.0,23.1.4,23.5.26 |
| flatbuffers-python | 1.12,2.0,23.1.4,23.5.26 |
| flex | 2.6.3,2.6.4,2.6.4,2.6.4,2.6.4,2.6.4 |
| flit | 3.9.0,3.9.0 |
| fmriprep | 23.1.0,23.1.4,23.2.1,24.1.0 |
| fontconfig | 2.13.92,2.14.1 |
| foss | 2020b,2022b,2024a |
| fosscuda | 2020b |
| freeglut | 3.2.1,3.4.0 |
| freetype | 2.10.3,2.10.3,2.12.1 |
| gc | 8.0.4,8.2.2,8.2.4 |
| gcccuda | 2020b,2022b |
| gcloud | 382.0.0,494.0.0 |
| gettext | 0.19.8.1,0.21,0.21,0.21.1,0.21.1,0.22.5,0.22.5 |
| gfbf | 2022b,2024a |
| gflags | 2.2.2 |
| giflib | 5.2.1,5.2.1 |
| git | 2.28.0,2.30.0,2.38.1,2.45.1 |
| git-lfs | 3.2.0,3.5.1 |
| glew | 2.1.0,2.2.0 |
| glib-networking | 2.72.1 |
| glibc | 2.34 |
| gmpy2 | 2.1.0b5,2.1.5 |
| gmsh | 4.11.1,4.11.1 |
| gnuplot | 5.4.1,5.4.6 |
| gomkl | 2022b |
| gompi | 2020b,2022b,2024a |
| gompic | 2020b |
| googletest | 1.10.0,1.12.1 |
| gperf | 3.1,3.1 |
| gperftools | 2.14 |
| gpu_burn | 20231110 |
| graphite2 | 1.3.14,1.3.14 |
| groff | 1.22.4,1.22.4 |
| grpcio | 1.59.3 |
| gsutil | 4.42,5.10 |
| gzip | 1.10,1.12,1.13 |
| h5py | 3.1.0,3.1.0,3.2.1,3.8.0 |
| hatchling | 1.18.0,1.24.2 |
| help2man | 1.47.4,1.47.16,1.49.2,1.49.3 |
| hiredis | 1.2.0 |
| hmmlearn | 0.3.0 |
| hunspell | 1.7.1 |
| hwloc | 2.2.0,2.8.0,2.10.0 |
| hypothesis | 5.41.2,5.41.5,6.1.1,6.68.2,6.103.1 |
| iccifort | 2020.4.304 |
| igraph | 0.9.5,0.10.4,0.10.4,0.10.6,0.10.6,0.10.10 |
| iimkl | 2022b |
| iimpi | 2020b,2022b,2024a |
| imageio | 2.9.0,2.31.1 |
| imgaug | 0.4.0 |
| imkl | 2020.4.304,2020.4.304,2020.4.304,2022.2.1,2022.2.1,2024.2.0 |
| imkl-FFTW | 2022.2.1,2024.2.0 |
| impi | 2019.9.304,2021.7.1,2021.13.0 |
| inih | 57 |
| intel | 2020b,2022b,2024a |
| intel-compilers | 2022.2.1,2024.2.0 |
| intltool | 0.51.0,0.51.0 |
| iomkl | 2020b,2022b |
| iompi | 2020b,2022b |
| jax | 0.2.19,0.3.25,0.4.25,0.4.25 |
| jbigkit | 2.1,2.1 |
| jemalloc | 5.2.1,5.3.0 |
| json-c | 0.16 |
| json-fortran | 8.3.0 |
| jupyter-resource-usage | 1.0.0 |
| jupyter-server | 2.7.0 |
| jupyter-server-proxy | 3.2.2 |
| jupyterlmod | 4.0.3 |
| kallisto | 0.48.0 |
| kim-api | 2.2.1,2.3.0 |
| kineto | 0.4.0 |
| leidenalg | 0.8.8,0.10.2 |
| lftp | 4.9.2 |
| libGDSII | 0.21 |
| libGLU | 9.0.1,9.0.2 |
| libGridXC | 0.9.6 |
| libPSML | 1.1.10 |
| libRmath | 4.1.0 |
| libXp | 1.0.3 |
| libaec | 1.0.6,1.0.6 |
| libaio | 0.3.112,0.3.113 |
| libarchive | 3.4.3,3.6.1,3.7.4 |
| libavif | 0.11.1,0.11.1 |
| libcerf | 1.14,2.3 |
| libcifpp | 5.0.6,7.0.3 |
| libcint | 5.5.0 |
| libcircle | 0.3,0.3 |
| libctl | 4.5.1 |
| libdap | 3.20.11 |
| libdeflate | 1.7,1.15 |
| libdrm | 2.4.102,2.4.114 |
| libepoxy | 1.5.4,1.5.10 |
| libev | 4.33 |
| libevent | 2.1.12,2.1.12,2.1.12 |
| libexif | 0.6.24,0.6.24 |
| libfabric | 1.11.0,1.16.1,1.21.0 |
| libffi | 3.3,3.4.4,3.4.5 |
| libgcrypt | 1.10.1 |
| libgd | 2.3.0,2.3.1,2.3.3 |
| libgdiplus | 6.1,6.1 |
| libgeotiff | 1.6.0,1.7.1 |
| libgit2 | 1.1.0,1.5.0 |
| libglvnd | 1.3.2,1.6.0 |
| libgpg-error | 1.46 |
| libharu | 2.3.0 |
| libiconv | 1.16,1.17,1.17 |
| libidn | 1.41 |
| libidn2 | 2.3.0,2.3.2 |
| libjpeg-turbo | 2.0.5,2.1.4 |
| libleidenalg | 0.11.1,0.11.1,0.11.1 |
| libmcfp | 1.2.2,1.3.3 |
| libnsl | 2.0.0 |
| libogg | 1.3.4,1.3.5 |
| libopus | 1.3.1 |
| libpci | 3.7.0 |
| libpciaccess | 0.16,0.17,0.18.1 |
| libpng | 1.2.59,1.5.30,1.6.37,1.6.38 |
| libpsl | 0.21.1 |
| libreadline | 8.0,8.2,8.2 |
| librsvg | 2.51.2 |
| librttopo | 1.1.0 |
| libsigc++ | 2.10.8 |
| libsndfile | 1.0.28,1.2.0 |
| libsodium | 1.0.18,1.0.18 |
| libspatialindex | 1.9.3 |
| libspatialite | 5.0.1 |
| libtasn1 | 4.19.0 |
| libtirpc | 1.3.1,1.3.3 |
| libtool | 2.4.6,2.4.7,2.4.7 |
| libunistring | 0.9.10,1.1,1.1 |
| libunwind | 1.4.0,1.6.2 |
| libvorbis | 1.3.7,1.3.7 |
| libwebkitgtk-1.0 | 1.2.4.9 |
| libwebp | 1.1.0,1.3.1 |
| libwpe | 1.14.1 |
| libxc | 4.3.4,4.3.4,5.1.2,5.1.5,6.1.0,6.1.0 |
| libxml++ | 2.40.1 |
| libxml2 | 2.9.10,2.9.14,2.10.3,2.12.7 |
| libxslt | 1.1.34,1.1.37 |
| libxsmm | 1.16.1 |
| libyaml | 0.2.5,0.2.5 |
| libzip | 1.9.2 |
| liftOver | 2023 |
| loompy | 3.0.7 |
| lpsolve | 5.5.2.11 |
| lwgrp | 1.0.3,1.0.5 |
| lxml | 4.9.2 |
| lz4 | 1.9.2,1.9.4,1.9.4 |
| maeparser | 1.3.1 |
| magma | 2.5.4,2.7.1,2.7.1 |
| make | 4.3,4.3,4.4.1,4.4.1 |
| makeinfo | 6.7,6.7,7.0.3 |
| mapDamage | 2.2.1 |
| matlab-proxy | 0.12.1,0.13.1,0.14.0,0.15.1,0.18.2,0.19.0 |
| matplotlib | 3.3.3,3.3.3,3.3.3,3.7.0 |
| maturin | 1.1.0,1.4.0,1.6.0 |
| mctc-lib | 0.3.1 |
| meson-python | 0.11.0,0.15.0,0.16.0 |
| mfold_util | 4.7 |
| mgltools | |
| miniconda | 22.9.0,22.11.1,23.1.0,23.3.1,23.5.2,24.3.0,24.3.0,24.7.1,24.9.2 |
| minimap2 | 2.22 |
| minizip | 1.1 |
| ml_dtypes | 0.3.1 |
| mlpack | 4.3.0,4.3.0 |
| mm-common | 1.0.4 |
| mongolite | 20240424,20240424 |
| morphosamplers | 0.0.10 |
| motif | 2.3.8,2.3.8 |
| mpi4py | 3.1.4 |
| mpifileutils | 0.11.1,0.11.1 |
| mrc | 1.3.6,1.3.13 |
| mrcfile | 1.3.0,1.5.0 |
| mstore | 0.2.0 |
| muParser | 2.3.4 |
| multicharge | 0.2.0 |
| nanobind | 2.1.0 |
| napari | 0.4.18 |
| nbclassic | 1.0.0 |
| ncbi-vdb | 2.10.9,3.0.10,3.1.1 |
| ncdu | 1.18 |
| ncompress | 4.2.4.6 |
| ncurses | 5.9,5.9,6.0,6.2,6.2,6.3,6.3,6.5,6.5 |
| ncview | 2.1.8,2.1.8 |
| nedit-ng | 2020.1 |
| netCDF | 4.6.1,4.7.4,4.7.4,4.7.4,4.7.4,4.9.0,4.9.0,4.9.0 |
| netCDF-C++ | 4.2 |
| netCDF-C++4 | 4.3.1,4.3.1 |
| netCDF-Fortran | 4.4.4,4.5.3,4.5.3,4.5.3,4.5.3,4.6.0,4.6.0,4.6.0 |
| netcdf4-python | 1.6.3 |
| nettle | 3.6,3.8.1 |
| networkx | 2.5,2.5,2.5.1,3.0 |
| nf-core | 2.14.1 |
| nghttp2 | 1.48.0 |
| nghttp3 | 0.6.0 |
| ngtcp2 | 0.7.0 |
| nlohmann_json | 3.11.2 |
| nodejs | 12.19.0,18.12.1,20.11.1 |
| nsync | 1.24.0,1.26.0 |
| numactl | 2.0.13,2.0.16,2.0.18 |
| numba | 0.58.1 |
| nvofbf | 2023.01 |
| nvompi | 2023.01 |
| occt | 7.5.0p1,7.5.0p1 |
| p11-kit | 0.24.1 |
| p7zip | 17.04 |
| pam-devel | 1.3.1 |
| parallel | 20210322 |
| parameterized | 0.9.0 |
| patchelf | 0.12,0.17.2,0.18.0 |
| phonopy | 2.27.0 |
| phyx | 1.3 |
| picard | 2.18.14,2.25.6 |
| pigz | 2.6,2.7 |
| pixman | 0.40.0,0.42.2 |
| pkg-config | 0.29.2,0.29.2 |
| pkgconf | 1.8.0,1.8.0,1.9.3,2.2.0 |
| pkgconfig | 1.5.1,1.5.5 |
| plotly.py | 4.14.3,5.13.1 |
| pocl | 1.6,1.8,5.0 |
| poetry | 1.5.1,1.7.1,1.8.3 |
| poppler | 21.06.1,21.06.1,22.12.0 |
| popt | 1.16 |
| postgis | 3.4.2 |
| printproto | 1.0.5 |
| prompt-toolkit | 3.0.36 |
| protobuf | 3.14.0,3.19.4,23.0 |
| protobuf-python | 3.14.0,3.19.4,4.23.0 |
| psycopg2 | 2.9.9 |
| pugixml | 1.12.1 |
| py-cpuinfo | 9.0.0 |
| py3Dmol | 2.0.1.post1,2.1.0 |
| pyFFTW | 0.13.1 |
| pySCENIC | 0.12.1 |
| pybind11 | 2.6.0,2.6.2,2.10.3,2.12.0,2.12.0 |
| pydantic | 2.5.3 |
| pyfaidx | 0.7.2.1 |
| pyproj | 3.5.0 |
| pytest | 7.4.2 |
| pytest-flakefinder | 1.1.0 |
| pytest-rerunfailures | 12.0 |
| pytest-shard | 0.1.2 |
| pytest-workflow | 2.0.1 |
| pytest-xdist | 2.3.0,3.3.1 |
| python-igraph | 0.9.8,0.11.4 |
| python-isal | 0.11.1 |
| qrupdate | 1.1.2 |
| rMATS-turbo | 4.1.1,4.1.2,4.2.0 |
| rasterio | 1.3.8 |
| re2c | 2.0.3,3.0 |
| rpmrebuild | 2.16,2.18 |
| ruamel.yaml | 0.17.21,0.17.21 |
| samblaster | 0.1.26 |
| scanpy | 1.9.8 |
| scikit-build | 0.11.1,0.11.1,0.17.2,0.17.6 |
| scikit-build-core | 0.9.3 |
| scikit-image | 0.18.1,0.18.1,0.18.3,0.21.0 |
| scikit-learn | 0.20.4,0.23.2,0.23.2,0.24.1,1.2.1 |
| segemehl | 0.3.4 |
| seqtk | 1.3 |
| setuptools | 64.0.3 |
| setuptools-rust | 1.9.0 |
| shRNA | 0.1 |
| siscone | 3.0.5 |
| slurm-drmaa | 1.1.3 |
| snakemake | 7.32.3 |
| snappy | 1.1.8,1.1.9,1.1.10 |
| sparsehash | 2.0.4 |
| spglib-python | 2.0.2,2.3.1 |
| statsmodels | 0.12.1,0.14.0 |
| sympy | 1.7.1,1.12 |
| t-SNE-CUDA | 3.0.1 |
| tabix | 0.2.6 |
| tbb | 2020.3,2021.9.0,2021.10.0,2021.13.0 |
| tcsh | 6.22.03,6.24.07 |
| tensorboard | 2.15.1 |
| tesseract | 5.3.0,5.3.0 |
| texlive | 20220321,20220321,20220321 |
| time | 1.9 |
| tmux | 3.4 |
| topaz | 0.2.5,0.2.5.20240417 |
| torchvision | 0.10.0,0.16.0 |
| tqdm | 4.56.2,4.60.0,4.64.1 |
| ttyd | 1.7.7 |
| typing-extensions | 3.7.4.3,4.9.0 |
| umap-learn | 0.5.3 |
| unifdef | 2.12 |
| unrar | 7.0.1 |
| utf8proc | 2.5.0,2.8.0 |
| util-linux | 2.36,2.38.1 |
| virtualenv | 20.23.1,20.26.2 |
| watershed-workflow | 1.4.0,1.4.0,1.5.0 |
| wget | 1.20.3 |
| wpebackend-fdo | 1.14.1 |
| wrapt | 1.15.0 |
| wxPython | 4.2.1 |
| wxWidgets | 3.1.4,3.1.4,3.2.0,3.2.2.1 |
| x264 | 20201026,20230226 |
| x265 | 3.3,3.5 |
| xarray | 2023.4.2,2023.4.2 |
| xextproto | 7.3.0 |
| xmlf90 | 1.5.4 |
| xorg-macros | 1.19.2,1.19.3,1.20.1 |
| xpdf | 4.04 |
| xprop | 1.2.5,1.2.5 |
| xtb | 6.5.1,6.6.0,6.6.1,6.7.1 |
| xxd | 8.2.4220,9.0.1696 |
| yaml-cpp | 0.7.0,0.7.0 |
| ycga-public | 1.6.0,1.7.2,1.7.3,1.7.4,1.7.5,1.7.6,1.7.7 |
| zlib | 1.2.11,1.2.11,1.2.11,1.2.12,1.2.12,1.2.13,1.3.1,1.3.1 |
| zstd | 1.4.5,1.5.2,1.5.6 |
| Package | Versions |
|---|---|
| ACTC | 1.1,1.1 |
| ADMIXTURE | 1.3.0 |
| AFNI | 23.2.08,2022.1.14,2023.1.01,2023.1.07,24.1.22 |
| ANTLR | 2.7.7 |
| ANTs | 2.3.5 |
| APBS | 1.4.2.1,3.4.1.Linux |
| APR | 1.7.0,1.7.5 |
| APR-util | 1.6.1,1.6.3 |
| ASE | 3.22.1 |
| ATK | 2.36.0,2.38.0 |
| AUGUSTUS | 3.4.0 |
| Abseil | 20230125.2 |
| AdapterRemoval | 2.3.2 |
| AlphaFold | 2.2.3,2.2.3,2.2.4,2.2.4,2.3.2,2.3.2,3.0.0 |
| AmberTools | 23.6 |
| Archive-Zip | 1.68,1.68 |
| AreTomo | 1.3.4 |
| AreTomo2 | 1.0.0 |
| AreTomo3 | 2.0.6beta |
| Armadillo | 10.2.1,11.4.3,11.4.3 |
| Arrow | 0.17.1,0.17.1,6.0.0,11.0.0,14.0.1,16.1.0 |
| Aspera-CLI | 3.9.6.1467.159c5b1 |
| Aspera-Connect | 4.2.4.265 |
| AuthentiCT | 1.0.1 |
| Autoconf | 2.69,2.71,2.72 |
| Automake | 1.16.2,1.16.5,1.16.5 |
| Autotools | 20200321,20220317,20231222 |
| BBMap | 38.90 |
| BCFtools | 1.11,1.16,1.21 |
| BEDOPS | 2.4.41 |
| BEDTools | 2.30.0 |
| BGEN-enkre | 1.1.7 |
| BLAST | 2.2.26 |
| BLAST+ | 2.13.0,2.14.1,2.15.0 |
| BLAT | 3.5,3.5 |
| BLIS | 0.9.0,1.0 |
| BLT | 20220626 |
| BWA | 0.7.17,0.7.17,0.7.17 |
| BamTools | 2.5.1,2.5.1,2.5.2 |
| BaseSpaceCLI | 1.5.3 |
| Bazel | 3.7.2,5.4.1,6.1.0,6.3.1 |
| Beast | 2.6.3,2.6.3,2.6.7,2.7.4,2.7.6 |
| BeautifulSoup | 4.11.1 |
| Bio-DB-BigFile | 1.07,1.07 |
| Bio-DB-HTS | 3.01,3.01 |
| BioPP | 2.4.1 |
| BioPerl | 1.7.8,1.7.8 |
| Biopython | 1.78,1.79,1.81,1.83 |
| Bismark | 0.24.0 |
| Bison | 3.0.4,3.0.4,3.0.5,3.7.1,3.7.1,3.8.2,3.8.2,3.8.2 |
| Blender | 4.0.1,4.2.1 |
| Block | 1.5.3 |
| Blosc | 1.21.0,1.21.3 |
| Blosc2 | 2.8.0 |
| Boost | 1.74.0,1.74.0,1.74.0,1.74.0,1.74.0,1.81.0,1.81.0,1.81.0,1.83.0,1.85.0,1.86.0 |
| Boost.MPI | 1.81.0,1.81.0 |
| Boost.Python | 1.74.0,1.81.0 |
| Boost.Python-NumPy | 1.74.0,1.81.0 |
| Bowtie | 1.3.0,1.3.0,1.3.1 |
| Bowtie2 | 2.3.4.3,2.4.2,2.4.2,2.5.1 |
| Brotli | 1.0.9,1.0.9 |
| Brunsli | 0.1 |
| Bsoft | 2.1.4 |
| CAMPARI | 4.0 |
| CCP4 | 8.0.011,8.0.015 |
| CD-HIT | 4.8.1 |
| CDO | 2.2.2 |
| CESM | 2.1.3,2.1.3 |
| CESM-deps | 2,2 |
| CFITSIO | 3.48,4.2.0 |
| CGAL | 4.14.3,4.14.3,5.2,5.2.4,5.5.2 |
| CLHEP | 2.4.4.0,2.4.6.4 |
| CMake | 3.18.4,3.18.4,3.20.1,3.24.3,3.29.3 |
| COMSOL | 5.2a,5.2a |
| CONN | 22a |
| CP2K | 8.1 |
| CPPE | 0.3.1 |
| CREST | 3.0.1,3.0.2 |
| CTFFIND | 4.1.14,4.1.14,4.1.14,4.1.14,4.1.14 |
| CUDA | 10.1.243,11.1.1,11.3.1,11.8.0,12.0.0,12.1.1,12.6.0 |
| CUDAcore | 11.1.1,11.3.1 |
| CUnit | 2.1 |
| Cartopy | 0.20.3,0.22.0 |
| Catch2 | 2.13.10 |
| Cbc | 2.10.5 |
| CellRanger | 3.0.2,6.1.2,7.0.0,7.0.1,7.1.0,7.2.0,8.0.1 |
| CellRanger-ARC | 2.0.2 |
| Cereal | 1.3.2,1.3.2 |
| Cgl | 0.60.7 |
| CharLS | 2.2.0,2.4.2 |
| CheMPS2 | 1.8.12 |
| Check | 0.15.2,0.15.2 |
| Chimera | 1.16 |
| ChimeraX | 1.6.1,1.7,1.8 |
| Clang | 11.0.1,13.0.1,15.0.5,16.0.4,16.0.4 |
| Clp | 1.17.8 |
| Code-Server | 4.7.0,4.7.0,4.16.1,4.17.0 |
| CoinUtils | 2.11.9 |
| Compress-Raw-Zlib | 2.202,2.202 |
| CoordgenLibs | 3.0.2 |
| Coot | 0.9.7,0.9.8.6 |
| CppUnit | 1.15.1 |
| Cufflinks | 20190706 |
| Cython | 0.29.22,3.0.8,3.0.10 |
| Cytoscape | 3.9.1 |
| DB | 18.1.40,18.1.40 |
| DBD-mysql | 4.050,4.050 |
| DB_File | 1.855 |
| DBus | 1.13.18,1.15.2 |
| DIAMOND | 2.0.15,2.1.7 |
| DMTCP | 3.0.0,3.0.0 |
| DSSP | 4.2.1,4.4.7 |
| Dice | 20240101 |
| Doxygen | 1.8.20,1.9.5 |
| EDirect | 20.4.20230912,20.5.20231006,22.8.20241011 |
| EIGENSOFT | 7.2.1 |
| ELPA | 2020.11.001,2020.11.001,2021.11.001,2022.05.001 |
| EMAN | 1.9 |
| EMAN2 | 2.91,2.99.47 |
| EMBOSS | 6.6.0 |
| ESM-2 | 2.0.0 |
| ESMF | 8.3.0,8.3.0 |
| EasyBuild | 4.6.2,4.7.0,4.7.1,4.7.2,4.8.0,4.8.1,4.8.2,4.9.0,4.9.1,4.9.2,4.9.3 |
| Eigen | 3.3.8,3.3.9,3.4.0,3.4.0,3.4.0 |
| El-MAVEN | 0.12.1beta |
| Emacs | 28.1,28.2 |
| ExifTool | 12.58,12.70 |
| Exodus | 20240403,20240403 |
| FASTX-Toolkit | 0.0.14 |
| FFTW | 2.1.5,2.1.5,2.1.5,2.1.5,3.3.8,3.3.8,3.3.8,3.3.8,3.3.8,3.3.10,3.3.10,3.3.10,3.3.10,3.3.10 |
| FFTW.MPI | 3.3.10,3.3.10,3.3.10 |
| FFmpeg | 4.3.1,5.1.2 |
| FHI-aims | 231212_1 |
| FLAC | 1.3.3,1.4.2 |
| FLASH | 2.2.00 |
| FLTK | 1.3.5,1.3.8 |
| FRE-NCtools | 2024.05 |
| FSL | 6.0.5.2,6.0.5.2,6.0.7.9 |
| FTGL | 2.3,2.4.0 |
| Faiss | 1.7.4 |
| FastME | 2.1.6.3 |
| FastQC | 0.11.9,0.12.1 |
| FastUniq | 1.1 |
| Fiji | 2.14.0,20221201,20230801 |
| Fiona | 1.9.2 |
| Flask | 2.2.3 |
| FlexiBLAS | 3.2.1,3.2.1,3.4.4 |
| FragGeneScan | 1.31 |
| FreeImage | 3.18.0,3.18.0 |
| FreeSurfer | dev,dev,7.3.2,7.4.1 |
| FreeXL | 2.0.0 |
| FriBidi | 1.0.10,1.0.12 |
| GATK | 3.8,4.2.0.0,4.2.6.1,4.4.0.0,4.5.0.0,4.6.0.0 |
| GCC | 10.2.0,12.2.0,13.3.0 |
| GCCcore | 7.3.0,10.2.0,12.2.0,13.3.0 |
| GCTA | 1.94.1 |
| GConf | 3.2.6 |
| GDAL | 3.2.1,3.6.2 |
| GDB | 10.1,13.2 |
| GDCM | 3.0.21 |
| GDRCopy | 2.1,2.3,2.3.1,2.4.1 |
| GEOS | 3.9.1,3.11.1 |
| GL2PS | 1.4.2,1.4.2 |
| GLM | 0.9.9.8 |
| GLPK | 4.65,5.0 |
| GLib | 2.66.1,2.75.0 |
| GLibmm | 2.49.7 |
| GMP | 6.2.0,6.2.1 |
| GObject-Introspection | 1.66.1,1.66.1,1.74.0 |
| GRASS | 8.2.0 |
| GROMACS | 2021.5,2023.3 |
| GSEA | 4.3.2 |
| GSL | 2.5,2.6,2.6,2.6,2.7,2.7,2.7 |
| GST-libav | 1.18.4,1.22.1 |
| GST-plugins-bad | 1.22.5 |
| GST-plugins-base | 1.18.4,1.18.4,1.22.1,1.22.1 |
| GST-plugins-good | 1.18.4,1.22.1 |
| GStreamer | 1.18.4,1.18.4,1.22.1,1.22.1 |
| GTK+ | 3.24.23 |
| GTK2 | 2.24.33 |
| GTK3 | 3.24.35 |
| GTK4 | 4.11.3 |
| GTS | 0.7.6 |
| Garfield++ | 5.0 |
| Gaussian | 16,16 |
| Gctf | 1.18,1.18 |
| Gdk-Pixbuf | 2.40.0,2.40.0,2.42.10 |
| Geant4 | 10.7.1 |
| Geant4-data | 11.3 |
| GenomeTools | 1.6.1 |
| Ghostscript | 9.53.3,10.0.0 |
| GitPython | 3.1.31 |
| Globus-CLI | 3.18.0,3.30.1 |
| GnuTLS | 3.7.8 |
| Go | 1.17.6,1.21.1,1.21.4,1.22.1 |
| Grace | 5.1.25 |
| Gradle | 8.6 |
| Graphene | 1.10.8 |
| GraphicsMagick | 1.3.36 |
| Graphviz | 2.47.0 |
| Guile | 2.2.7,3.0.9,3.0.9 |
| Gurobi | 9.1.2,10.0.3 |
| HDF | 4.2.15,4.2.15 |
| HDF5 | 1.10.7,1.10.7,1.10.7,1.10.7,1.14.0,1.14.0,1.14.0,1.14.0 |
| HDFView | 3.3.1 |
| HH-suite | 3.3.0,3.3.0,3.3.0 |
| HISAT-3N | 20221013 |
| HISAT2 | 2.2.1 |
| HMMER | 3.3.2,3.3.2,3.4 |
| HOOMD-blue | 4.9.1,4.9.1 |
| HPCG | 3.1,3.1,3.1,3.1 |
| HPL | 2.3,2.3,2.3,2.3 |
| HTSeq | 0.13.5 |
| HTSlib | 1.11,1.11,1.12,1.16,1.17,1.21 |
| HarfBuzz | 2.6.7,5.3.1 |
| Harminv | 1.4.1,1.4.2 |
| HepMC3 | 3.2.6 |
| Highway | 1.0.3 |
| HyPhy | 2.5.62 |
| Hypre | 2.20.0,2.27.0 |
| ICU | 67.1,72.1,75.1 |
| IDBA-UD | 1.1.3 |
| IGV | 2.16.0,2.16.2,2.17.4,2.19.1 |
| IMOD | 4.11.15,4.11.16,4.11.24_RHEL7,4.11.24,4.12.56_RHEL7,4.12.62_RHEL8 |
| IOR | 4.0.0,4.0.0 |
| IPython | 7.18.1,8.14.0 |
| IQ-TREE | 2.1.2 |
| ISA-L | 2.30.0 |
| ISL | 0.23,0.26 |
| ImageMagick | 7.0.10,7.1.0 |
| Imath | 3.1.6 |
| Infernal | 1.1.4 |
| IsoNet | 0.2.1 |
| JAGS | 4.3.0,4.3.2 |
| Jansson | 2.14 |
| JasPer | 2.0.24,4.0.0 |
| Java | 1.8.345,8.345,11.0.16,17.0.4,21.0.2 |
| JsonCpp | 1.9.4,1.9.5 |
| Judy | 1.0.5,1.0.5 |
| Julia | 1.8.2,1.8.5,1.9.2,1.10.0,1.10.2,1.10.4,1.11.1 |
| Jupyter-bundle | 20230823 |
| JupyterHub | 4.0.1 |
| JupyterLab | 2.2.8,4.0.3 |
| JupyterNotebook | 7.0.3 |
| KaHIP | 3.14 |
| Kalign | 3.3.1,3.4.0 |
| Kent_tools | 411,461 |
| Knitro | 12.0.0,14.0.0 |
| Kraken2 | 2.1.3 |
| LAME | 3.100,3.100 |
| LAMMPS | 2Aug2023,23Jun2022 |
| LDC | 0.17.6,1.25.1 |
| LERC | 4.0.0 |
| LHAPDF | 6.5.4 |
| LLVM | 11.0.0,14.0.6,15.0.5,16.0.4 |
| LMDB | 0.9.24,0.9.29 |
| LSD2 | 2.2 |
| LZO | 2.10,2.10 |
| Leptonica | 1.83.0 |
| LibSoup | 3.0.8 |
| LibTIFF | 4.1.0,4.2.0,4.4.0 |
| Libint | 2.6.0 |
| LittleCMS | 2.11,2.14 |
| Lua | 5.4.2,5.4.4 |
| M4 | 1.4.17,1.4.18,1.4.18,1.4.18,1.4.19,1.4.19,1.4.19 |
| MACS2 | 2.2.7.1,2.2.9.1,2.2.9.1 |
| MACS3 | 3.0.1 |
| MAFFT | 7.475,7.505 |
| MAGeCK | 0.5.9.5 |
| MATIO | 1.5.23 |
| MATLAB | 2018b,2020b,2022a,2022b,2023a,2023b |
| MCL | 14.137 |
| MCR | R2019b.8,R2020b.5,R2021b.6,R2022a.6,R2023a |
| MDI | 1.4.16 |
| MEME | 5.4.1 |
| METIS | 5.1.0,5.1.0,5.1.0 |
| MINC | 2.4.06 |
| MMseqs2 | 13,14 |
| MPB | 1.11.1 |
| MPC | 1.2.1,1.3.1 |
| MPFR | 4.1.0,4.2.0 |
| MPICH | 4.2.1 |
| MRIcron | 1.0.20190902 |
| MRtrix3 | 3.0.2 |
| MUMPS | 5.3.5,5.6.1 |
| MUMmer | 4.0.0rc1 |
| MUSCLE | 5.1 |
| MadGraph5_aMC | 2.9.16 |
| MafFilter | 1.3.1 |
| Mako | 1.1.3,1.2.4 |
| MariaDB | 10.5.8,10.11.2 |
| Markdown | 3.6 |
| Mathematica | 13.0.1 |
| Maven | 3.9.2 |
| MaxBin | 2.2.7 |
| MaxQuant | 2.4.2.0,2.4.2.0,2.6.1.0 |
| Meep | 1.24.0,1.26.0 |
| Mercurial | 5.7.1 |
| Mesa | 20.2.1,21.3.3,22.2.4 |
| MeshLab | 2023.12 |
| Meson | 0.55.3,0.62.1,0.64.0,1.3.1,1.4.0 |
| Metal | 2020 |
| MitoGraph | 3.0 |
| Mono | 6.8.0.105,6.8.0.123 |
| MotionCor2 | 1.5.0,1.6.4 |
| MotionCor3 | 1.0.1 |
| MrBayes | 3.2.6,3.2.7 |
| MultiQC | 1.10.1 |
| NAG | 29 |
| NAMD | 2.14,2.14,2.14,2.14 |
| NASM | 2.15.05,2.15.05 |
| NBO | 7.0 |
| NCCL | 2.8.3,2.8.4,2.10.3,2.16.2,2.16.2,2.16.2,2.18.3,2.23.4 |
| NCO | 5.2.1,5.2.1 |
| NECI | 20230620 |
| NEdit | 5.7 |
| NGS | 2.10.9 |
| NIfTI | 2.0.0 |
| NLopt | 2.6.2,2.6.2,2.7.0,2.7.1 |
| NSPR | 4.29,4.35 |
| NSS | 3.57,3.85 |
| NVHPC | 21.11,21.11,23.1,24.9 |
| Net-core | 3.1.101 |
| NetLogo | 6.4.0 |
| Netpbm | 10.86.41 |
| Nextflow | 22.10.6,23.04.2,23.10.1,24.04.2,24.04.4 |
| Ninja | 1.10.1,1.11.1,1.12.1 |
| ORCA | 5.0.3,5.0.3,5.0.4,5.0.4,6.0.0,6.0.1 |
| OSU-Micro-Benchmarks | 5.7,5.7,6.2,6.2 |
| OligoArray | 2.1 |
| OligoArrayAux | 3.8 |
| OpenBLAS | 0.3.12,0.3.21,0.3.21,0.3.27 |
| OpenBabel | 3.1.1 |
| OpenCV | 4.5.1,4.8.0 |
| OpenEXR | 2.5.5,3.1.5 |
| OpenFOAM | v2012,v2206,v2212 |
| OpenJPEG | 2.4.0,2.5.0 |
| OpenLibm | 0.7.5 |
| OpenMM | 7.5.0,7.5.1,7.5.1,7.5.1,7.7.0,8.0.0 |
| OpenMPI | 4.0.5,4.0.5,4.0.5,4.0.5,4.0.5,4.1.4,4.1.4,4.1.4 |
| OpenPGM | 5.2.122,5.2.122 |
| OpenSSL | 1.0,1.1,3 |
| OpenSlide | 3.4.1 |
| OpenSlide-Java | 0.12.4 |
| OrthoFinder | 2.5.4 |
| Osi | 0.108.8 |
| PALEOMIX | 1.3.8 |
| PAML | 4.10.7 |
| PBZIP2 | 1.1.13 |
| PCRE | 8.44,8.45 |
| PCRE2 | 10.35,10.40 |
| PDBFixer | 1.7 |
| PEAR | 0.9.11 |
| PEET | 1.15.0,1.16.0a |
| PETSc | 3.15.0,3.17.4,3.20.3 |
| PGI | 18.10,18.10 |
| PIPseeker | 2.1.4 |
| PKTOOLS | 2.6.7.6,2.6.7.6 |
| PLINK | 1.9b_6.21,2_avx2_20221024 |
| PLUMED | 2.6.2,2.7.0,2.7.3,2.9.0,2.9.2 |
| PMIx | 5.0.2 |
| POV-Ray | 3.7.0.8,3.7.0.10 |
| PRINSEQ | 0.20.4 |
| PROJ | 7.2.1,9.1.1 |
| PRRTE | 3.0.5 |
| PYTHIA | 8.309 |
| Pandoc | 2.13,3.1.2 |
| Pango | 1.47.0,1.50.12 |
| ParMETIS | 4.0.3 |
| ParaView | 5.8.1,5.11.0 |
| PartitionFinder | 2.1.1 |
| Perl | 5.28.0,5.32.0,5.32.0,5.32.1,5.36.0,5.36.0,5.36.1,5.38.0,5.38.2 |
| Perl-bundle-CPAN | 5.36.1 |
| Phenix | 1.20.1,1.20.1 |
| PhyloBayes | 4.1e |
| Pillow | 8.0.1,9.4.0 |
| Pillow-SIMD | 7.1.2,9.5.0 |
| Pint | 0.22 |
| PnetCDF | 1.12.2,1.12.3,1.13.0,1.13.0 |
| PostgreSQL | 13.2,15.2 |
| PuLP | 2.7.0 |
| PyBLP | 1.1.0 |
| PyBerny | 0.6.3 |
| PyCairo | 1.24.0 |
| PyCharm | 2022.3.2,2024.3.2 |
| PyCheMPS2 | 1.8.12 |
| PyGObject | 3.44.1 |
| PyInstaller | 6.3.0 |
| PyOpenGL | 3.1.5,3.1.6 |
| PyQt5 | 5.15.4,5.15.7 |
| PySCF | 2.4.0 |
| PyTables | 3.5.2,3.8.0 |
| PyTorch | 1.9.0,1.13.1,2.1.2,2.1.2 |
| PyYAML | 5.3.1,6.0 |
| PycURL | 7.45.2 |
| Pylada-light | 2023Oct13 |
| Pysam | 0.16.0.1,0.16.0.1,0.16.0.1,0.21.0 |
| Python | 2.7.18,2.7.18,3.8.6,3.8.6,3.10.8,3.10.8,3.10.8,3.10.8,3.12.3 |
| Python-bundle-PyPI | 2023.06,2024.06 |
| QCA | 2.3.5 |
| QScintilla | 2.11.6 |
| QTLtools | 1.3.1 |
| Qhull | 2020.2,2020.2 |
| Qt5 | 5.14.2,5.15.7 |
| Qt5Webkit | 5.212.0,5.212.0 |
| QtKeychain | 0.13.2 |
| QtPy | 2.3.0 |
| Qtconsole | 5.4.0 |
| QuPath | 0.5.0,0.5.1 |
| QuantumESPRESSO | 6.8,7.0,7.2 |
| Quip | 1.1.8,1.1.8,20171217 |
| Qwt | 6.1.5,6.2.0 |
| R | 4.2.0,4.2.0,4.3.2,4.3.2,4.4.1,4.4.1 |
| R-INLA | 24.01.18 |
| R-bundle-Bioconductor | 3.15,3.16,3.18,3.19 |
| R-bundle-CRAN | 2023.12,2024.06 |
| RDKit | 2022.09.5 |
| RE2 | 2023 |
| RECON | 1.08 |
| RELION | 3.0.8,3.1.4,3.1.4,3.1.4,4.0.0,4.0.1,4.0.1,5beta,5beta,5.0.0 |
| RELION-composite-masks | 5.0.0 |
| RMBlast | 2.11.0 |
| ROOT | 6.26.06,6.26.10 |
| RSEM | 1.3.3 |
| RStudio | 2022.07.2,2022.12.0,2024.04.2 |
| RStudio-Server | 2024.04.1+748 |
| RapidJSON | 1.1.0,1.1.0 |
| Regenie | 4.0 |
| RepeatMasker | 4.1.2 |
| RepeatScout | 1.0.6 |
| ResMap | 1.95 |
| RevBayes | 1.1.1,1.2.1,1.2.2,1.2.2 |
| Rivet | 3.1.9 |
| Rmath | 4.0.4,4.4.1 |
| Rosetta | 3.12 |
| Ruby | 2.7.2,3.0.5,3.2.2 |
| Rust | 1.52.1,1.65.0,1.70.0,1.75.0,1.78.0 |
| SAMtools | 1.11,1.11,1.16,1.16.1,1.18,1.20,1.21 |
| SAS | 9.4M8,9.4 |
| SBGrid | 2.11.2 |
| SCOTCH | 6.1.0,7.0.3 |
| SCons | 4.0.1,4.5.2 |
| SDL2 | 2.0.14,2.26.3 |
| SHAPEIT | 2.r904.glibcv2.17 |
| SHAPEIT4 | 4.2.2 |
| SLEPc | 3.15.0,3.17.2 |
| SMRT-Link | 11.1.0.166339,12.0.0 |
| SOCI | 4.0.3,4.0.3 |
| SPAGeDi | 1.5d |
| SPAdes | 3.15.1,3.15.5 |
| SPM | 12.5_r7771 |
| SQLite | 3.33.0,3.39.4,3.45.3 |
| SRA-Toolkit | 2.10.9,3.0.10,3.1.1,3.1.1 |
| STAR | 2.7.6a,2.7.7a,2.7.8a,2.7.9a,2.7.11a,2.7.11a |
| STREAM | 5.10 |
| SWIG | 4.0.2,4.1.1 |
| Salmon | 1.4.0 |
| Sambamba | 0.8.0 |
| ScaFaCoS | 1.0.1,1.0.4 |
| ScaLAPACK | 2.1.0,2.1.0,2.2.0,2.2.0,2.2.0 |
| SciPy-bundle | 2020.11,2020.11,2020.11,2020.11,2020.11,2021.05,2023.02,2024.05 |
| Seaborn | 0.12.2,0.13.2 |
| Seq-Gen | 1.3.4 |
| SeqKit | 2.3.1,2.8.1 |
| Serf | 1.3.9,1.3.9 |
| Shapely | 1.8.5.post1,2.0.1 |
| Sherpa | 3.0.0 |
| Slicer | 5.6.2 |
| SpaceRanger | 2.1.1 |
| Spark | 3.1.1,3.1.1,3.5.0,3.5.0,3.5.1,3.5.3,3.5.4 |
| SpectrA | 1.0.0,1.0.1 |
| Stacks | 2.59 |
| Stata | 17 |
| StringTie | 2.1.4 |
| Subread | 2.0.3 |
| Subversion | 1.14.0,1.14.3 |
| SuiteSparse | 5.8.1,5.13.0 |
| Summovie | 1.0.2 |
| SuperLU_DIST | 8.1.2 |
| Szip | 2.1.1,2.1.1 |
| TOMO3D | 01 |
| TOPAS | 3.9 |
| TRF | 4.09.1 |
| TRUST4 | 1.0.7 |
| TWL-NINJA | 0.97 |
| Tcl | 8.6.10,8.6.12,8.6.14 |
| TensorFlow | 2.5.0,2.7.1,2.13.0,2.15.1 |
| TensorRT | 8.6.1 |
| Tk | 8.6.10,8.6.12 |
| Tkinter | 3.8.6,3.10.8 |
| TopHat | 2.1.2,2.1.2 |
| TotalView | 2023.3.10 |
| TreeMix | 1.13 |
| Trilinos | 13.4.1 |
| Trim_Galore | 0.6.7 |
| Trimmomatic | 0.39 |
| UCC | 1.1.0,1.3.0 |
| UCC-CUDA | 1.1.0,1.1.0,1.3.0 |
| UCX | 1.9.0,1.9.0,1.10.0,1.13.1,1.16.0 |
| UCX-CUDA | 1.10.0,1.13.1,1.13.1,1.13.1,1.16.0 |
| UDUNITS | 2.2.26,2.2.28 |
| USEARCH | 11.0.667 |
| UnZip | 6.0,6.0,6.0 |
| Unblur | 1.0.2 |
| VASP | 5.4.1,5.4.4,5.4.4,6.3.0,6.4.2 |
| VASPsol | 5.4.1 |
| VCFtools | 0.1.16 |
| VDJtools | 1.2.1 |
| VEP | 107,110,112,112.0 |
| VESTA | 3.5.8 |
| VMD | 1.9.4a57 |
| VSCode | 1.95.3,1.96.2,1.96.4 |
| VTK | 9.0.1,9.0.1,9.2.6 |
| VTune | 2023.2.0 |
| Valgrind | 3.16.1,3.21.0 |
| ViennaRNA | 2.5.1 |
| Vim | 9.0.1434 |
| VisPy | 0.12.2 |
| Voro++ | 0.4.6,0.4.6 |
| WRF | 4.4.1 |
| Wannier90 | 3.1.0,3.1.0 |
| Wayland | 1.22.0 |
| Waylandpp | 1.0.0 |
| WebKitGTK+ | 2.40.4 |
| X11 | 20201008,20221110 |
| XCFun | 2.1.1 |
| XGBoost | 2.1.1,2.1.1 |
| XML-LibXML | 2.0206,2.0208 |
| XMedCon | 0.25.0 |
| XZ | 5.2.5,5.2.7,5.4.5 |
| Xerces-C++ | 3.1.4,3.2.3,3.2.4 |
| Xvfb | 1.20.9,21.1.6 |
| YODA | 1.9.9 |
| Yasm | 1.3.0,1.3.0 |
| Z3 | 4.8.10,4.10.2,4.12.2,4.12.2 |
| ZeroMQ | 4.3.3,4.3.4 |
| Zip | 3.0,3.0 |
| aiohttp | 3.8.5 |
| alibuild | 1.17.11 |
| angsd | 0.940 |
| anndata | 0.10.5.post1 |
| annovar | 2019Oct24,20200607 |
| ant | 1.10.9,1.10.12,1.10.12 |
| archspec | 0.1.2,0.2.0 |
| aria2 | 1.35.0,1.36.0 |
| arpack-ng | 3.8.0,3.8.0,3.8.0 |
| arrow-R | 6.0.0.2,11.0.0.3,14.0.0.2,16.1.0 |
| at-spi2-atk | 2.38.0,2.38.0 |
| at-spi2-core | 2.38.0,2.46.0 |
| attr | 2.4.48,2.5.1 |
| attrdict3 | 2.0.2 |
| awscli | 2.1.23,2.13.20,2.15.2 |
| bases2Fastq | v1.5.1,v1.5.1,v2.0.0 |
| bcl2fastq2 | 2.20.0,2.20.0 |
| beagle-lib | 3.1.2,3.1.2,3.1.2,3.1.2,4.0.0,4.0.1 |
| binutils | 2.28,2.30,2.30,2.35,2.35,2.39,2.39,2.40,2.42,2.42 |
| biswebnode | 1.3.0 |
| bokeh | 2.2.3,2.2.3,3.2.1 |
| boto3 | 1.20.13,1.26.163 |
| breseq | 0.35.5,0.38.0,0.38.1 |
| bsddb3 | 6.2.9,6.2.9 |
| bzip2 | 1.0.8,1.0.8,1.0.8 |
| c-ares | 1.19.1 |
| cURL | 7.55.1,7.72.0,7.86.0,7.86.0,8.7.1 |
| cairo | 1.16.0,1.16.0,1.17.4 |
| ccache | 4.6.3 |
| cffi | 1.16.0 |
| code-server | 4.91.1,4.95.3 |
| configurable-http-proxy | 4.5.5 |
| cppy | 1.2.1 |
| cromwell | 86 |
| cryptography | 41.0.1,42.0.8 |
| cuDNN | 8.0.5.39,8.2.1.32,8.7.0.84,8.8.0.121,8.9.2.26,9.5.0.50 |
| cuTENSOR | 1.7.0.1,2.0.2.5 |
| cutadapt | 3.4 |
| cxxopts | 3.0.0 |
| cyrus-sasl | 2.1.28 |
| dSQ | 1.05 |
| dask | 2021.2.0,2021.2.0,2023.7.1 |
| dbus-glib | 0.112 |
| dcm2niix | 1.0.20211006,1.0.20230411 |
| dedalus | 3.0.2 |
| deepTools | 3.5.1,3.5.5 |
| deml | 1.1.4 |
| dftd4 | 3.4.0 |
| dill | 0.3.7 |
| dlib | 19.22,19.22,19.22 |
| dorado | 0.5.3 |
| dotNET-Core | 7.0.410 |
| dotNET-SDK | 3.1.300 |
| double-conversion | 3.1.5,3.2.1 |
| dtcmp | 1.1.2,1.1.4 |
| ecBuild | 3.8.0 |
| ecCodes | 2.31.0 |
| einops | 0.7.0 |
| elbencho | 2.0,3.0 |
| elfutils | 0.183,0.189 |
| eman | |
| enchant-2 | 2.3.3 |
| ensmallen | 2.21.1,2.21.1 |
| exiv2 | 0.27.5,0.28.0 |
| expat | 2.2.5,2.2.9,2.4.9,2.6.2 |
| expecttest | 0.1.3 |
| fastjet | 3.4.0 |
| fastjet-contrib | 1.049 |
| fastp | 0.23.2 |
| ffnvcodec | 11.1.5.2 |
| file | 5.39,5.43 |
| flatbuffers | 1.12.0,23.1.4,23.5.26 |
| flatbuffers-python | 1.12,2.0,23.1.4,23.5.26 |
| flex | 2.6.3,2.6.4,2.6.4,2.6.4,2.6.4,2.6.4 |
| flit | 3.9.0,3.9.0 |
| fmriprep | 23.1.0,23.1.4,23.2.1,24.1.0 |
| fontconfig | 2.13.92,2.14.1 |
| foss | 2020b,2022b,2024a |
| fosscuda | 2020b |
| freeglut | 3.2.1,3.4.0 |
| freetype | 2.10.3,2.10.3,2.12.1 |
| gc | 8.0.4,8.2.2,8.2.4 |
| gcccuda | 2020b,2022b |
| gcloud | 382.0.0,494.0.0 |
| gettext | 0.19.8.1,0.21,0.21,0.21.1,0.21.1,0.22.5,0.22.5 |
| gfbf | 2022b,2024a |
| gflags | 2.2.2 |
| giflib | 5.2.1,5.2.1 |
| git | 2.28.0,2.30.0,2.38.1,2.45.1 |
| git-lfs | 3.2.0,3.5.1 |
| glew | 2.1.0,2.2.0 |
| glib-networking | 2.72.1 |
| glibc | 2.34 |
| gmpy2 | 2.1.0b5,2.1.5 |
| gmsh | 4.11.1,4.11.1 |
| gnuplot | 5.4.1,5.4.6 |
| gomkl | 2022b |
| gompi | 2020b,2022b,2024a |
| gompic | 2020b |
| googletest | 1.10.0,1.12.1 |
| gperf | 3.1,3.1 |
| gperftools | 2.14 |
| gpu_burn | 20231110 |
| graphite2 | 1.3.14,1.3.14 |
| groff | 1.22.4,1.22.4 |
| grpcio | 1.59.3 |
| gsutil | 4.42,5.10 |
| gzip | 1.10,1.12,1.13 |
| h5py | 3.1.0,3.1.0,3.2.1,3.8.0 |
| hatchling | 1.18.0,1.24.2 |
| help2man | 1.47.4,1.47.16,1.49.2,1.49.3 |
| hiredis | 1.2.0 |
| hmmlearn | 0.3.0 |
| hunspell | 1.7.1 |
| hwloc | 2.2.0,2.8.0,2.10.0 |
| hypothesis | 5.41.2,5.41.5,6.1.1,6.68.2,6.103.1 |
| iccifort | 2020.4.304 |
| igraph | 0.9.5,0.10.4,0.10.4,0.10.6,0.10.6,0.10.10 |
| iimkl | 2022b |
| iimpi | 2020b,2022b,2024a |
| imageio | 2.9.0,2.31.1 |
| imgaug | 0.4.0 |
| imkl | 2020.4.304,2020.4.304,2020.4.304,2022.2.1,2022.2.1,2024.2.0 |
| imkl-FFTW | 2022.2.1,2024.2.0 |
| impi | 2019.9.304,2021.7.1,2021.13.0 |
| inih | 57 |
| intel | 2020b,2022b,2024a |
| intel-compilers | 2022.2.1,2024.2.0 |
| intltool | 0.51.0,0.51.0 |
| iomkl | 2020b,2022b |
| iompi | 2020b,2022b |
| jax | 0.2.19,0.3.25,0.4.25,0.4.25 |
| jbigkit | 2.1,2.1 |
| jemalloc | 5.2.1,5.3.0 |
| json-c | 0.16 |
| json-fortran | 8.3.0 |
| jupyter-resource-usage | 1.0.0 |
| jupyter-server | 2.7.0 |
| jupyter-server-proxy | 3.2.2 |
| jupyterlmod | 4.0.3 |
| kallisto | 0.48.0 |
| kim-api | 2.2.1,2.3.0 |
| kineto | 0.4.0 |
| leidenalg | 0.8.8,0.10.2 |
| lftp | 4.9.2 |
| libGDSII | 0.21 |
| libGLU | 9.0.1,9.0.2 |
| libGridXC | 0.9.6 |
| libPSML | 1.1.10 |
| libRmath | 4.1.0 |
| libXp | 1.0.3 |
| libaec | 1.0.6,1.0.6 |
| libaio | 0.3.112,0.3.113 |
| libarchive | 3.4.3,3.6.1,3.7.4 |
| libavif | 0.11.1,0.11.1 |
| libcerf | 1.14,2.3 |
| libcifpp | 5.0.6,7.0.3 |
| libcint | 5.5.0 |
| libcircle | 0.3,0.3 |
| libctl | 4.5.1 |
| libdap | 3.20.11 |
| libdeflate | 1.7,1.15 |
| libdrm | 2.4.102,2.4.114 |
| libepoxy | 1.5.4,1.5.10 |
| libev | 4.33 |
| libevent | 2.1.12,2.1.12,2.1.12 |
| libexif | 0.6.24,0.6.24 |
| libfabric | 1.11.0,1.16.1,1.21.0 |
| libffi | 3.3,3.4.4,3.4.5 |
| libgcrypt | 1.10.1 |
| libgd | 2.3.0,2.3.1,2.3.3 |
| libgdiplus | 6.1,6.1 |
| libgeotiff | 1.6.0,1.7.1 |
| libgit2 | 1.1.0,1.5.0 |
| libglvnd | 1.3.2,1.6.0 |
| libgpg-error | 1.46 |
| libharu | 2.3.0 |
| libiconv | 1.16,1.17,1.17 |
| libidn | 1.41 |
| libidn2 | 2.3.0,2.3.2 |
| libjpeg-turbo | 2.0.5,2.1.4 |
| libleidenalg | 0.11.1,0.11.1,0.11.1 |
| libmcfp | 1.2.2,1.3.3 |
| libnsl | 2.0.0 |
| libogg | 1.3.4,1.3.5 |
| libopus | 1.3.1 |
| libpci | 3.7.0 |
| libpciaccess | 0.16,0.17,0.18.1 |
| libpng | 1.2.59,1.5.30,1.6.37,1.6.38 |
| libpsl | 0.21.1 |
| libreadline | 8.0,8.2,8.2 |
| librsvg | 2.51.2 |
| librttopo | 1.1.0 |
| libsigc++ | 2.10.8 |
| libsndfile | 1.0.28,1.2.0 |
| libsodium | 1.0.18,1.0.18 |
| libspatialindex | 1.9.3 |
| libspatialite | 5.0.1 |
| libtasn1 | 4.19.0 |
| libtirpc | 1.3.1,1.3.3 |
| libtool | 2.4.6,2.4.7,2.4.7 |
| libunistring | 0.9.10,1.1,1.1 |
| libunwind | 1.4.0,1.6.2 |
| libvorbis | 1.3.7,1.3.7 |
| libwebkitgtk-1.0 | 1.2.4.9 |
| libwebp | 1.1.0,1.3.1 |
| libwpe | 1.14.1 |
| libxc | 4.3.4,4.3.4,5.1.2,5.1.5,6.1.0,6.1.0 |
| libxml++ | 2.40.1 |
| libxml2 | 2.9.10,2.9.14,2.10.3,2.12.7 |
| libxslt | 1.1.34,1.1.37 |
| libxsmm | 1.16.1 |
| libyaml | 0.2.5,0.2.5 |
| libzip | 1.9.2 |
| liftOver | 2023 |
| loompy | 3.0.7 |
| lpsolve | 5.5.2.11 |
| lwgrp | 1.0.3,1.0.5 |
| lxml | 4.9.2 |
| lz4 | 1.9.2,1.9.4,1.9.4 |
| maeparser | 1.3.1 |
| magma | 2.5.4,2.7.1,2.7.1 |
| make | 4.3,4.3,4.4.1,4.4.1 |
| makeinfo | 6.7,6.7,7.0.3 |
| mapDamage | 2.2.1 |
| matlab-proxy | 0.12.1,0.13.1,0.14.0,0.15.1,0.18.2,0.19.0 |
| matplotlib | 3.3.3,3.3.3,3.3.3,3.7.0 |
| maturin | 1.1.0,1.4.0,1.6.0 |
| mctc-lib | 0.3.1 |
| meson-python | 0.11.0,0.15.0,0.16.0 |
| mfold_util | 4.7 |
| mgltools | |
| miniconda | 22.9.0,22.11.1,23.1.0,23.3.1,23.5.2,24.3.0,24.3.0,24.7.1,24.9.2 |
| minimap2 | 2.22 |
| minizip | 1.1 |
| ml_dtypes | 0.3.1 |
| mlpack | 4.3.0,4.3.0 |
| mm-common | 1.0.4 |
| mongolite | 20240424,20240424 |
| morphosamplers | 0.0.10 |
| motif | 2.3.8,2.3.8 |
| mpi4py | 3.1.4 |
| mpifileutils | 0.11.1,0.11.1 |
| mrc | 1.3.6,1.3.13 |
| mrcfile | 1.3.0,1.5.0 |
| mstore | 0.2.0 |
| muParser | 2.3.4 |
| multicharge | 0.2.0 |
| nanobind | 2.1.0 |
| napari | 0.4.18 |
| nbclassic | 1.0.0 |
| ncbi-vdb | 2.10.9,3.0.10,3.1.1 |
| ncdu | 1.18 |
| ncompress | 4.2.4.6 |
| ncurses | 5.9,5.9,6.0,6.2,6.2,6.3,6.3,6.5,6.5 |
| ncview | 2.1.8,2.1.8 |
| nedit-ng | 2020.1 |
| netCDF | 4.6.1,4.7.4,4.7.4,4.7.4,4.7.4,4.9.0,4.9.0,4.9.0 |
| netCDF-C++ | 4.2 |
| netCDF-C++4 | 4.3.1,4.3.1 |
| netCDF-Fortran | 4.4.4,4.5.3,4.5.3,4.5.3,4.5.3,4.6.0,4.6.0,4.6.0 |
| netcdf4-python | 1.6.3 |
| nettle | 3.6,3.8.1 |
| networkx | 2.5,2.5,2.5.1,3.0 |
| nf-core | 2.14.1 |
| nghttp2 | 1.48.0 |
| nghttp3 | 0.6.0 |
| ngtcp2 | 0.7.0 |
| nlohmann_json | 3.11.2 |
| nodejs | 12.19.0,18.12.1,20.11.1 |
| nsync | 1.24.0,1.26.0 |
| numactl | 2.0.13,2.0.16,2.0.18 |
| numba | 0.58.1 |
| nvofbf | 2023.01 |
| nvompi | 2023.01 |
| occt | 7.5.0p1,7.5.0p1 |
| p11-kit | 0.24.1 |
| p7zip | 17.04 |
| pam-devel | 1.3.1 |
| parallel | 20210322 |
| parameterized | 0.9.0 |
| patchelf | 0.12,0.17.2,0.18.0 |
| phonopy | 2.27.0 |
| phyx | 1.3 |
| picard | 2.18.14,2.25.6 |
| pigz | 2.6,2.7 |
| pixman | 0.40.0,0.42.2 |
| pkg-config | 0.29.2,0.29.2 |
| pkgconf | 1.8.0,1.8.0,1.9.3,2.2.0 |
| pkgconfig | 1.5.1,1.5.5 |
| plotly.py | 4.14.3,5.13.1 |
| pocl | 1.6,1.8,5.0 |
| poetry | 1.5.1,1.7.1,1.8.3 |
| poppler | 21.06.1,21.06.1,22.12.0 |
| popt | 1.16 |
| postgis | 3.4.2 |
| printproto | 1.0.5 |
| prompt-toolkit | 3.0.36 |
| protobuf | 3.14.0,3.19.4,23.0 |
| protobuf-python | 3.14.0,3.19.4,4.23.0 |
| psycopg2 | 2.9.9 |
| pugixml | 1.12.1 |
| py-cpuinfo | 9.0.0 |
| py3Dmol | 2.0.1.post1,2.1.0 |
| pyFFTW | 0.13.1 |
| pySCENIC | 0.12.1 |
| pybind11 | 2.6.0,2.6.2,2.10.3,2.12.0,2.12.0 |
| pydantic | 2.5.3 |
| pyfaidx | 0.7.2.1 |
| pyproj | 3.5.0 |
| pytest | 7.4.2 |
| pytest-flakefinder | 1.1.0 |
| pytest-rerunfailures | 12.0 |
| pytest-shard | 0.1.2 |
| pytest-workflow | 2.0.1 |
| pytest-xdist | 2.3.0,3.3.1 |
| python-igraph | 0.9.8,0.11.4 |
| python-isal | 0.11.1 |
| qrupdate | 1.1.2 |
| rMATS-turbo | 4.1.1,4.1.2,4.2.0 |
| rasterio | 1.3.8 |
| re2c | 2.0.3,3.0 |
| rpmrebuild | 2.16,2.18 |
| ruamel.yaml | 0.17.21,0.17.21 |
| samblaster | 0.1.26 |
| scanpy | 1.9.8 |
| scikit-build | 0.11.1,0.11.1,0.17.2,0.17.6 |
| scikit-build-core | 0.9.3 |
| scikit-image | 0.18.1,0.18.1,0.18.3,0.21.0 |
| scikit-learn | 0.20.4,0.23.2,0.23.2,0.24.1,1.2.1 |
| segemehl | 0.3.4 |
| seqtk | 1.3 |
| setuptools | 64.0.3 |
| setuptools-rust | 1.9.0 |
| shRNA | 0.1 |
| siscone | 3.0.5 |
| slurm-drmaa | 1.1.3 |
| snakemake | 7.32.3 |
| snappy | 1.1.8,1.1.9,1.1.10 |
| sparsehash | 2.0.4 |
| spglib-python | 2.0.2,2.3.1 |
| statsmodels | 0.12.1,0.14.0 |
| sympy | 1.7.1,1.12 |
| t-SNE-CUDA | 3.0.1 |
| tabix | 0.2.6 |
| tbb | 2020.3,2021.9.0,2021.10.0,2021.13.0 |
| tcsh | 6.22.03,6.24.07 |
| tensorboard | 2.15.1 |
| tesseract | 5.3.0,5.3.0 |
| texlive | 20220321,20220321,20220321 |
| time | 1.9 |
| tmux | 3.4 |
| topaz | 0.2.5,0.2.5.20240417 |
| torchvision | 0.10.0,0.16.0 |
| tqdm | 4.56.2,4.60.0,4.64.1 |
| ttyd | 1.7.7 |
| typing-extensions | 3.7.4.3,4.9.0 |
| umap-learn | 0.5.3 |
| unifdef | 2.12 |
| unrar | 7.0.1 |
| utf8proc | 2.5.0,2.8.0 |
| util-linux | 2.36,2.38.1 |
| virtualenv | 20.23.1,20.26.2 |
| watershed-workflow | 1.4.0,1.4.0,1.5.0 |
| wget | 1.20.3 |
| wpebackend-fdo | 1.14.1 |
| wrapt | 1.15.0 |
| wxPython | 4.2.1 |
| wxWidgets | 3.1.4,3.1.4,3.2.0,3.2.2.1 |
| x264 | 20201026,20230226 |
| x265 | 3.3,3.5 |
| xarray | 2023.4.2,2023.4.2 |
| xextproto | 7.3.0 |
| xmlf90 | 1.5.4 |
| xorg-macros | 1.19.2,1.19.3,1.20.1 |
| xpdf | 4.04 |
| xprop | 1.2.5,1.2.5 |
| xtb | 6.5.1,6.6.0,6.6.1,6.7.1 |
| xxd | 8.2.4220,9.0.1696 |
| yaml-cpp | 0.7.0,0.7.0 |
| ycga-public | 1.6.0,1.7.2,1.7.3,1.7.4,1.7.5,1.7.6,1.7.7 |
| zlib | 1.2.11,1.2.11,1.2.11,1.2.12,1.2.12,1.2.13,1.3.1,1.3.1 |
| zstd | 1.4.5,1.5.2,1.5.6 |
| Package | Versions |
|---|---|
| AFNI | 24.0.15,24.1.22,2023.1.07 |
| ANTs | 2.3.5 |
| ATK | 2.38.0 |
| Armadillo | 10.2.1,11.4.3 |
| Arrow | 11.0.0,14.0.1,16.1.0 |
| Autoconf | 2.69,2.71 |
| Automake | 1.16.2,1.16.5 |
| Autotools | 20200321,20220317 |
| BCFtools | 1.17 |
| BLIS | 0.9.0 |
| BWA | 0.7.17 |
| BeautifulSoup | 4.11.1 |
| Bison | 3.7.1,3.8.2,3.8.2 |
| Boost | 1.74.0,1.74.0,1.81.0 |
| Brotli | 1.0.9,1.0.9 |
| Brunsli | 0.1 |
| CFITSIO | 4.2.0 |
| CMake | 3.18.4,3.20.1,3.24.3 |
| CUDA | 11.1.1,12.0.0,12.1.1 |
| CUDAcore | 11.1.1 |
| CharLS | 2.4.2 |
| Check | 0.15.2,0.15.2 |
| DB | 18.1.40,18.1.40 |
| DBus | 1.13.18,1.15.2 |
| Doxygen | 1.8.20,1.9.5 |
| EasyBuild | 4.9.0,4.9.1,4.9.2,4.9.3 |
| Eigen | 3.3.8,3.3.9,3.4.0 |
| Emacs | 28.2 |
| FFTW | 3.3.8,3.3.8,3.3.10 |
| FFTW.MPI | 3.3.10 |
| FFmpeg | 4.3.1,5.1.2 |
| FLAC | 1.3.3,1.4.2 |
| FSL | 6.0.5.1,6.0.5.2,6.0.7.9 |
| FlexiBLAS | 3.2.1 |
| FreeSurfer | |
| FriBidi | 1.0.10,1.0.12 |
| GATK | 4.5.0.0 |
| GCC | 10.2.0,12.2.0 |
| GCCcore | 10.2.0,12.2.0 |
| GDAL | 3.2.1,3.6.2 |
| GDRCopy | 2.1,2.3,2.3.1 |
| GEOS | 3.9.1,3.11.1 |
| GLPK | 4.65,5.0 |
| GLib | 2.66.1,2.75.0 |
| GLibmm | 2.49.7 |
| GMP | 6.2.0,6.2.1 |
| GObject-Introspection | 1.66.1,1.74.0 |
| GSL | 2.6,2.7 |
| GST-plugins-bad | 1.22.5 |
| GST-plugins-base | 1.22.1 |
| GStreamer | 1.22.1 |
| GTK3 | 3.24.35 |
| GTK4 | 4.11.3 |
| GTS | 0.7.6 |
| Gdk-Pixbuf | 2.40.0,2.42.10 |
| Ghostscript | 9.53.3,10.0.0 |
| Globus-CLI | 3.30.1 |
| Go | 1.17.6,1.21.2 |
| Graphene | 1.10.8 |
| Graphviz | 2.47.0 |
| HDF | 4.2.15,4.2.15 |
| HDF5 | 1.10.7,1.10.7,1.14.0 |
| HTSlib | 1.17 |
| HarfBuzz | 2.6.7,5.3.1 |
| Highway | 1.0.3 |
| Hypre | 2.20.0 |
| ICU | 67.1,72.1 |
| IPython | 8.14.0 |
| ITK | 5.2.1 |
| ImageMagick | 7.0.10,7.1.0 |
| Imath | 3.1.6 |
| JasPer | 2.0.24,4.0.0 |
| Java | 11.0.16,17.0.4 |
| LAME | 3.100,3.100 |
| LDC | 1.24.0,1.35.0 |
| LERC | 4.0.0 |
| LLVM | 11.0.0,15.0.5 |
| LibTIFF | 4.1.0,4.4.0 |
| LittleCMS | 2.11,2.14 |
| M4 | 1.4.18,1.4.19,1.4.19 |
| MATLAB | 2022b,2023a |
| MCR | R2019b.8,R2019b.9 |
| METIS | 5.1.0 |
| MPFR | 4.1.0,4.2.0 |
| MUMPS | 5.3.5 |
| Mako | 1.1.3,1.2.4 |
| Mesa | 20.2.1,22.2.4 |
| Meson | 0.55.3,0.64.0 |
| NASM | 2.15.05,2.15.05 |
| NLopt | 2.6.2,2.7.0,2.7.1 |
| NSPR | 4.29 |
| NSS | 3.57 |
| Netpbm | 10.86.41 |
| Nextflow | 24.04.2 |
| Ninja | 1.10.1,1.11.1 |
| OpenBLAS | 0.3.12,0.3.21 |
| OpenCV | 4.8.0 |
| OpenEXR | 3.1.5 |
| OpenFace | 2.2.0 |
| OpenJPEG | 2.5.0 |
| OpenMPI | 4.0.5,4.0.5,4.1.4 |
| OpenPGM | 5.2.122 |
| OpenSSL | 1.1 |
| PCRE | 8.44,8.45 |
| PCRE2 | 10.35,10.40 |
| PETSc | 3.15.0 |
| PROJ | 7.2.1,9.1.1 |
| Pango | 1.47.0,1.50.12 |
| Perl | 5.32.0,5.32.0,5.36.0 |
| Pillow | 9.4.0 |
| PostgreSQL | 15.2 |
| PyCairo | 1.24.0 |
| PyGObject | 3.44.1 |
| PyQt5 | 5.15.7 |
| PyYAML | 6.0 |
| Python | 2.7.18,3.8.6,3.10.8,3.10.8 |
| Qhull | 2020.2 |
| Qt5 | 5.14.2 |
| Qwt | 6.1.5 |
| R | 4.2.0,4.3.2,4.4.1 |
| R-bundle-Bioconductor | 3.18,3.19 |
| R-bundle-CRAN | 2023.12,2024.06 |
| RE2 | 2023 |
| RapidJSON | 1.1.0 |
| Rust | 1.65.0 |
| SAMtools | 1.20 |
| SAS | 9.4M8,9.4 |
| SCOTCH | 6.1.0 |
| SDL2 | 2.26.3 |
| SPM | 12.5_r7771 |
| SQLite | 3.33.0,3.39.4 |
| SWIG | 4.0.2 |
| Sambamba | 1.0.1 |
| ScaLAPACK | 2.1.0,2.1.0,2.2.0 |
| SciPy-bundle | 2020.11,2020.11,2023.02 |
| Slicer | 5.6.2 |
| Spark | 3.5.1,3.5.3,3.5.4 |
| SuiteSparse | 5.8.1 |
| Szip | 2.1.1,2.1.1 |
| Tcl | 8.6.10,8.6.12 |
| Tk | 8.6.10,8.6.12 |
| Tkinter | 3.10.8 |
| UCC | 1.1.0 |
| UCX | 1.9.0,1.9.0,1.13.1 |
| UCX-CUDA | 1.13.1 |
| UDUNITS | 2.2.26,2.2.28 |
| UnZip | 6.0,6.0 |
| VTK | 8.2.0,9.0.1,9.1.0 |
| Wayland | 1.22.0 |
| X11 | 20201008,20221110 |
| XZ | 5.2.5,5.2.7 |
| Xerces-C++ | 3.2.4 |
| Xvfb | 1.20.9,21.1.6 |
| Yasm | 1.3.0,1.3.0 |
| ZeroMQ | 4.3.4 |
| aiohttp | 3.8.5 |
| annovar | 20200607 |
| ant | 1.10.12 |
| arpack-ng | 3.8.0,3.8.0 |
| arrow-R | 14.0.0.2,16.1.0 |
| at-spi2-atk | 2.38.0 |
| at-spi2-core | 2.46.0 |
| attr | 2.4.48 |
| awscli | 2.13.20 |
| binutils | 2.35,2.39,2.39 |
| bzip2 | 1.0.8,1.0.8 |
| cURL | 7.72.0,7.86.0 |
| cairo | 1.16.0,1.17.4 |
| cppy | 1.2.1 |
| cuDNN | 8.8.0.121 |
| dcm2niix | 1.0.20230411 |
| dlib | 19.22 |
| double-conversion | 3.1.5 |
| dtcmp | 1.1.2 |
| elfutils | 0.189 |
| expat | 2.2.9,2.4.9 |
| ffnvcodec | 11.1.5.2 |
| flex | 2.6.4,2.6.4 |
| fmriprep | 23.2.1 |
| fontconfig | 2.13.92,2.14.1 |
| foss | 2020b,2022b |
| fosscuda | 2020b |
| freeglut | 3.2.1,3.4.0 |
| freetype | 2.10.3,2.12.1 |
| gcccuda | 2020b |
| gettext | 0.21,0.21.1,0.21.1 |
| gfbf | 2022b |
| giflib | 5.2.1 |
| git | 2.28.0,2.38.1 |
| git-lfs | 3.2.0 |
| gompi | 2020b,2022b |
| gompic | 2020b |
| googletest | 1.12.1 |
| gperf | 3.1,3.1 |
| groff | 1.22.4,1.22.4 |
| gzip | 1.10,1.12 |
| h5py | 3.1.0 |
| help2man | 1.47.16,1.49.2 |
| hwloc | 2.2.0,2.8.0 |
| hypothesis | 5.41.2,6.68.2 |
| intltool | 0.51.0,0.51.0 |
| jbigkit | 2.1,2.1 |
| json-c | 0.16 |
| libGLU | 9.0.1,9.0.2 |
| libXp | 1.0.3 |
| libarchive | 3.4.3,3.6.1 |
| libcircle | 0.3 |
| libdeflate | 1.15 |
| libdrm | 2.4.102,2.4.114 |
| libepoxy | 1.5.10 |
| libevent | 2.1.12 |
| libfabric | 1.11.0,1.16.1 |
| libffi | 3.3,3.4.4 |
| libgd | 2.3.0,2.3.1 |
| libgeotiff | 1.6.0,1.7.1 |
| libgit2 | 1.1.0,1.5.0 |
| libglvnd | 1.3.2,1.6.0 |
| libiconv | 1.16,1.17 |
| libjpeg-turbo | 2.0.5,2.1.4 |
| libogg | 1.3.4,1.3.5 |
| libopus | 1.3.1 |
| libpciaccess | 0.16,0.17 |
| libpng | 1.2.59,1.6.37,1.6.38 |
| libreadline | 6.2,8.0,8.2 |
| libsigc++ | 2.10.8 |
| libsndfile | 1.0.28,1.2.0 |
| libsodium | 1.0.18 |
| libtirpc | 1.3.1,1.3.3 |
| libtool | 2.4.6,2.4.7 |
| libunwind | 1.4.0,1.6.2 |
| libvorbis | 1.3.7,1.3.7 |
| libwebp | 1.3.1 |
| libxml++ | 2.40.1 |
| libxml2 | 2.9.10,2.10.3 |
| libxslt | 1.1.34,1.1.37 |
| libyaml | 0.2.5 |
| lwgrp | 1.0.3 |
| lxml | 4.9.2 |
| lz4 | 1.9.2,1.9.4 |
| make | 4.4.1 |
| makeinfo | 6.7 |
| matlab-proxy | 0.14.0,0.15.1 |
| matplotlib | 3.7.0 |
| miniconda | 23.5.2,24.3.0,24.7.1 |
| mm-common | 1.0.4 |
| motif | 2.3.8 |
| mpi4py | 3.1.4 |
| mpifileutils | 0.11.1 |
| ncurses | 6.2,6.3,6.3 |
| netCDF | 4.7.4,4.9.0 |
| nettle | 3.6,3.8.1 |
| networkx | 3.0 |
| nlohmann_json | 3.11.2 |
| nodejs | 20.11.1 |
| numactl | 2.0.13,2.0.16 |
| p7zip | 17.04 |
| patchelf | 0.12,0.17.2 |
| picard | 3.0.0 |
| pigz | 2.7 |
| pixman | 0.40.0,0.42.2 |
| pkg-config | 0.29.2,0.29.2 |
| pkgconf | 1.8.0,1.9.3 |
| pkgconfig | 1.5.1 |
| printproto | 1.0.5 |
| pybind11 | 2.6.0,2.10.3 |
| re2c | 2.0.3 |
| ruamel.yaml | 0.17.21 |
| samblaster | 0.1.26 |
| scikit-build | 0.17.2 |
| snappy | 1.1.8,1.1.9 |
| tbb | 2021.10.0 |
| tcsh | 6.24.07 |
| utf8proc | 2.8.0 |
| util-linux | 2.36,2.38.1 |
| x264 | 20201026,20230226 |
| x265 | 3.3,3.5 |
| xextproto | 7.3.0 |
| xorg-macros | 1.19.2,1.19.3 |
| zlib | 1.2.11,1.2.12,1.2.12 |
| zstd | 1.4.5,1.5.2 |
| Package | Versions |
|---|---|
| ATK | 2.38.0 |
| Abseil | 20230125.2 |
| Armadillo | 11.4.3 |
| Arrow | 16.1.0 |
| Autoconf | 2.69,2.71 |
| Automake | 1.16.2,1.16.5 |
| Autotools | 20200321,20220317 |
| BLIS | 0.9.0 |
| Bazel | 6.3.1 |
| Bison | 3.7.1,3.8.2,3.8.2 |
| Boost | 1.81.0 |
| Brotli | 1.0.9 |
| Brunsli | 0.1 |
| CFITSIO | 4.2.0 |
| CMake | 3.18.4,3.24.3 |
| CUDA | 11.8.0,12.0.0,12.1.1,12.2.2 |
| Clang | 16.0.4 |
| Code-Server | 4.16.1 |
| DB | 18.1.40,18.1.40 |
| DBus | 1.15.2 |
| Doxygen | 1.9.5 |
| ELPA | 2022.05.001 |
| EasyBuild | 4.8.2,4.9.0,4.9.1,4.9.2,4.9.3 |
| Eigen | 3.4.0 |
| Embree | 2.17.7,3.13.4 |
| FFTW | 2.1.5,2.1.5,2.1.5,3.3.10,3.3.10 |
| FFTW.MPI | 3.3.10 |
| FFmpeg | 4.3.2,5.1.2 |
| FLAC | 1.4.2 |
| FlexiBLAS | 3.2.1,3.2.1 |
| FreeImage | 3.18.0 |
| FreeSurfer | 7.4.1 |
| FriBidi | 1.0.12 |
| GCC | 10.2.0,12.2.0 |
| GCCcore | 10.2.0,12.2.0 |
| GDAL | 3.6.2 |
| GDRCopy | 2.3 |
| GEOS | 3.11.1 |
| GLFW | 3.3.8 |
| GLPK | 5.0 |
| GLib | 2.75.0 |
| GMP | 6.2.1 |
| GObject-Introspection | 1.74.0 |
| GROMACS | 2023.3 |
| GSL | 2.6,2.7 |
| GST-libav | 1.22.1 |
| GST-plugins-bad | 1.22.5 |
| GST-plugins-base | 1.22.1 |
| GST-plugins-good | 1.22.1 |
| GStreamer | 1.22.1 |
| GTK3 | 3.24.35 |
| GTK4 | 4.11.3 |
| Gaussian | 16 |
| Gdk-Pixbuf | 2.42.10 |
| Ghostscript | 10.0.0 |
| Go | 1.17.6,1.21.4 |
| Graphene | 1.10.8 |
| HDF | 4.2.15 |
| HDF5 | 1.10.7,1.14.0,1.14.0 |
| HarfBuzz | 2.8.2,5.3.1 |
| Highway | 1.0.3 |
| ICU | 72.1 |
| ImageMagick | 7.1.0 |
| Imath | 3.1.6 |
| JasPer | 2.0.33,4.0.0 |
| Java | 11.0.16 |
| JsonCpp | 1.9.5 |
| Julia | 1.9.3 |
| LAME | 3.100 |
| LAMMPS | 23Jun2022 |
| LERC | 4.0.0 |
| LLVM | 15.0.5 |
| LibTIFF | 4.4.0 |
| LittleCMS | 2.14 |
| M4 | 1.4.18,1.4.19,1.4.19 |
| MATLAB | 2023a,2023b |
| MPC | 1.3.1 |
| MPFR | 4.2.0 |
| Mako | 1.2.4 |
| Mesa | 22.2.4 |
| Meson | 0.64.0 |
| NASM | 2.15.05 |
| NCCL | 2.16.2 |
| NLopt | 2.7.1 |
| NSPR | 4.35 |
| NSS | 3.85 |
| NVHPC | 23.1 |
| Ninja | 1.11.1 |
| OpenBLAS | 0.3.21,0.3.21 |
| OpenCV | 4.5.5,4.8.0 |
| OpenEXR | 3.1.5 |
| OpenJPEG | 2.5.0 |
| OpenMPI | 4.0.5,4.1.4,4.1.4 |
| OpenSSL | 1.1 |
| OpenSlide | 3.4.1 |
| PCRE | 8.45 |
| PCRE2 | 10.40 |
| PLUMED | 2.9.0 |
| PROJ | 9.1.1 |
| Pango | 1.50.12 |
| Perl | 5.32.0,5.32.0,5.36.0 |
| Pillow | 9.4.0 |
| Pillow-SIMD | 9.5.0 |
| PostgreSQL | 15.2 |
| PyCairo | 1.24.0 |
| PyGObject | 3.44.1 |
| PyTorch | 2.0.1,2.0.1,2.1.2,2.1.2,2.3.0a0 |
| PyYAML | 6.0 |
| Python | 2.7.18,3.10.8,3.10.8 |
| Qhull | 2020.2 |
| Qt5 | 5.15.7 |
| Qt5Webkit | 5.212.0 |
| QuantumESPRESSO | 7.2 |
| R | 4.3.0,4.4.1 |
| R-bundle-Bioconductor | 3.19 |
| R-bundle-CRAN | 2024.06 |
| RE2 | 2023 |
| RapidJSON | 1.1.0 |
| Ruby | 3.0.4,3.0.5,3.2.2 |
| Rust | 1.65.0 |
| SDL2 | 2.26.3 |
| SQLite | 3.39.4 |
| ScaFaCoS | 1.0.4 |
| ScaLAPACK | 2.2.0 |
| SciPy-bundle | 2023.02 |
| Szip | 2.1.1,2.1.1 |
| Tcl | 8.6.12 |
| TensorFlow | 2.13.0 |
| Tk | 8.6.12 |
| Tkinter | 3.10.8 |
| UCC | 1.1.0 |
| UCC-CUDA | 1.1.0 |
| UCX | 1.9.0,1.13.1 |
| UCX-CUDA | 1.13.1,1.13.1,1.13.1 |
| UDUNITS | 2.2.28 |
| UnZip | 6.0 |
| VTK | 9.2.6 |
| Voro++ | 0.4.6 |
| Wayland | 1.22.0 |
| X11 | 20221110 |
| XZ | 5.2.5,5.2.7 |
| Xerces-C++ | 3.2.3,3.2.4 |
| Xvfb | 21.1.6 |
| Yasm | 1.3.0 |
| Z3 | 4.12.2,4.12.2 |
| Zip | 3.0 |
| aiohttp | 3.8.5 |
| ant | 1.10.12 |
| archspec | 0.2.0 |
| arpack-ng | 3.8.0 |
| arrow-R | 16.1.0 |
| assimp | 5.2.5 |
| at-spi2-atk | 2.38.0 |
| at-spi2-core | 2.46.0 |
| awscli | 2.13.20 |
| binutils | 2.35,2.35,2.39,2.39 |
| bzip2 | 1.0.8,1.0.8 |
| cURL | 7.72.0,7.86.0 |
| cairo | 1.17.4 |
| cppy | 1.2.1 |
| cuDNN | 8.8.0.121,8.9.2.26,8.9.2.26,8.9.2.26 |
| dSQ | 1.05 |
| dill | 0.3.7 |
| double-conversion | 3.2.1 |
| elfutils | 0.189 |
| expat | 2.2.9,2.4.9 |
| expecttest | 0.1.3 |
| ffnvcodec | 11.1.5.2 |
| flatbuffers | 23.1.4 |
| flatbuffers-python | 23.1.4 |
| flex | 2.6.4,2.6.4,2.6.4 |
| fontconfig | 2.14.1 |
| foss | 2022b |
| freetype | 2.12.1 |
| gettext | 0.21,0.21.1,0.21.1 |
| gfbf | 2022b |
| giflib | 5.2.1 |
| git | 2.38.1 |
| git-lfs | 3.2.0 |
| glew | 2.2.0 |
| gmpy2 | 2.1.5 |
| gompi | 2020b,2022b |
| googletest | 1.12.1 |
| gperf | 3.1 |
| gpu_burn | 20231110 |
| graphite2 | 1.3.14 |
| groff | 1.22.4,1.22.4 |
| gzip | 1.12 |
| h5py | 3.8.0 |
| help2man | 1.47.16,1.49.2 |
| hwloc | 2.2.0,2.8.0 |
| hypothesis | 6.68.2 |
| iimpi | 2022b |
| imkl | 2022.2.1 |
| imkl-FFTW | 2022.2.1 |
| impi | 2021.7.1 |
| intel | 2022b |
| intel-compilers | 2022.2.1 |
| intltool | 0.51.0 |
| iomkl | 2022b |
| jbigkit | 2.1 |
| json-c | 0.16 |
| kim-api | 2.3.0 |
| kineto | 0.4.0 |
| libGLU | 9.0.2 |
| libarchive | 3.4.3,3.6.1 |
| libdeflate | 1.15 |
| libdrm | 2.4.114 |
| libepoxy | 1.5.10 |
| libevent | 2.1.12 |
| libfabric | 1.11.0,1.16.1 |
| libffi | 3.4.4 |
| libgeotiff | 1.7.1 |
| libgit2 | 1.5.0 |
| libglvnd | 1.6.0 |
| libiconv | 1.17 |
| libjpeg-turbo | 2.1.4 |
| libogg | 1.3.5 |
| libopus | 1.3.1 |
| libpciaccess | 0.16,0.17 |
| libpng | 1.6.38 |
| libreadline | 8.0,8.2 |
| libsndfile | 1.2.0 |
| libtirpc | 1.3.3 |
| libtool | 2.4.6,2.4.7 |
| libunwind | 1.6.2 |
| libvorbis | 1.3.7 |
| libwebp | 1.3.1 |
| libxc | 6.1.0 |
| libxml2 | 2.9.10,2.10.3 |
| libxslt | 1.1.37 |
| libyaml | 0.2.5 |
| lz4 | 1.9.4 |
| magma | 2.7.2,2.7.2 |
| make | 4.3 |
| makeinfo | 6.7 |
| matlab-proxy | 0.14.0,0.15.1 |
| matplotlib | 3.7.0 |
| miniconda | 23.5.2,24.3.0 |
| mpi4py | 3.1.4 |
| ncurses | 6.2,6.2,6.3,6.3 |
| netCDF | 4.9.0 |
| nettle | 3.8.1 |
| networkx | 2.8.8,3.0 |
| nlohmann_json | 3.11.2 |
| nodejs | 14.21.3,18.12.1,20.11.1 |
| nsync | 1.26.0 |
| numactl | 2.0.13,2.0.16 |
| openslide-python | 1.3.1 |
| patchelf | 0.17.2 |
| pigz | 2.7 |
| pixman | 0.42.2 |
| pkg-config | 0.29.2,0.29.2 |
| pkgconf | 1.8.0,1.9.3 |
| pkgconfig | 1.5.5 |
| protobuf | 3.19.4,23.0 |
| protobuf-python | 3.19.4,4.23.0 |
| pybind11 | 2.10.3 |
| pytest-flakefinder | 1.1.0 |
| pytest-rerunfailures | 12.0 |
| pytest-shard | 0.1.2 |
| re2c | 3.0 |
| ruamel.yaml | 0.17.21 |
| scikit-build | 0.17.2 |
| snappy | 1.1.9 |
| sympy | 1.12 |
| tbb | 2021.10.0 |
| torchvision | 0.15.2,0.15.2,0.16.2,0.16.2,0.18.0a0 |
| utf8proc | 2.8.0 |
| util-linux | 2.38.1 |
| x264 | 20230226 |
| x265 | 3.5 |
| xorg-macros | 1.19.2,1.19.3 |
| xxd | 9.0.1696 |
| zlib | 1.2.11,1.2.11,1.2.12,1.2.12 |
| zstd | 1.5.2 |
Find Modules
All Available Modules
To list all available modules, run:
module avail
Search For Modules
You can search for modules or extensions with spider and avail. For example, to find and list all Python version 3 modules, run:
module avail python/3
To find any module or extension that mentions python in its name or description, use the command:
module spider python
Get Module Help
You can get a brief description of a module and the url to the software's homepage by running:
module help modulename/version
If you don't find a commonly used software package you require, contact us with a software installation request. Otherwise, check out our installation guides to install it for yourself.
Load and Unload Modules
Load
The module load command modifies your environment so you can use the specified software package(s).
- This command is case-sensitive to module names.
- The
module loadcommand will load dependencies as needed, you don't need to load them separately. - For batch jobs, add
module loadcommand(s) to your submission script.
For example, to load Python version 3.8.6 and BLAST+ version 2.11.0, find modules with matching toolchain suffixes and run the command:
module load Python/3.8.6-GCCcore-10.2.0 BLAST+/2.11.0-GCCcore-10.2.0
Lmod will add python and the BLAST commands to your environment. Since both of these modules were built with the GCCcore/10.2.0 toolchain module, they will not load conflicting libraries. Recall you can see the other modules that were loaded by running module list.
Module Defaults
As new versions of software get installed and others are deprecated, the default module version can change over time. It is best practice to note the specific module versions you are using for a project and load those explicitly, e.g. module load Python/3.8.6-GCCcore-10.2.0 not module load Python. This makes your work more reproducible and less likely to change unexpectedly in the future.
Unload
You can also unload a specific module that you've previously loaded:
module unload R
Or unload all modules at once with:
module reset
Purge Lightly
We used to recommend module purge instead of module reset for module unloading. However, module purge is slower and also prints a deceptive warning about a 'sticky' module called StdEnv that these commands leave loaded. Avoid unloading StdEnv unless explicitly told to do so, otherwise you will lose some important setup for the cluster you are on.
Module Collections
Save Collections
It can be a pain to enter a long list of modules every time you return to a project. Module collections allow you to create sets of modules to load together. This method is particularly useful if you have two or more module sets that may conflict with one another.
Save a collection of modules by first loading all the modules you want to save together then run:
module save environment_name
(replace environment_name with something more meaningful to you)
Restore Collections
Load a collection with module restore:
module restore environment_name
To modify a collection: restore it, make the desired changes by loading and/or unloading modules, then save it to the same name.
List Collections
To get a list of your collections, run:
module savelist
ml: A Convinient Tool
Lmod provides a convinient tool called ml to simplify all of the module commands.
List Module Loaded
ml
Load Modules
ml Python/3.8.6-GCCcore-10.2.0
Unload Modules
ml -Python
With moudle Sub-commands
ml can be used to replace the module command. It can take all the sub-commands from module and works the same way as module does.
ml load Python R
ml unload Python
ml spider Python
ml avail
ml whatis Python
ml key Python
ml purge
ml save test
ml restore test
Environment Variables
To refer to the directory where the software from a module is stored, you can use the environment variable $EBROOTMODULENAME where MODULENAME is the name of the module in all caps with no spaces. This can be useful for finding the executables, libraries, or readme files that are included with the software:
[netid@node ~ ]$ module load SAMtools
[netid@node ~ ]$ echo $EBVERSIONSAMTOOLS
1.11
[netid@node ~ ]$ ls $EBROOTSAMTOOLS
bin easybuild include lib lib64 share
[netid@node ~ ]$ ls $EBROOTSAMTOOLS/bin
ace2sam maq2sam-short psl2sam.pl soap2sam.pl
blast2sam.pl md5fa r2plot.lua vcfutils.lua
bowtie2sam.pl md5sum-lite sam2vcf.pl wgsim
export2sam.pl novo2sam.pl samtools wgsim_eval.pl
interpolate_sam.pl plot-ampliconstats samtools.pl zoom2sam.pl
maq2sam-long plot-bamstats seq_cache_populate.pl
Further Reading
You can view documentation while on the cluster using the command:
man module
There is even more information at the official Lmod website and related documentation.
Last update: February 17, 2025